New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1653774	33 (0.790)	3 (0.070)	3/252	NT	8.5%	coding (205/525 nt)	aroK	shikimate kinase
	?	CP000730	= 1653820	32 (0.790)					coding (159/525 nt)	aroK	shikimate kinase

ATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1653677‑1653774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgTAAACATGGTGAACAATATTTCAGGAATTTAGAGTTCACATGTTTGCAAGAATGTATTAACACTGCAGATATAATTGCTACTGGTGGTGGTATTATTGAGAGTGAAGAGGCATTTAATTTTTTGAAAAATCAAAAAAA  <  CP000730/1653820‑1653683                                                                                                                                                                                                                                              ATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGTAAACATGGTGAACAATATTTCAGGAATTTAGAGTTCACATGT                                                                                                 >  1:307061/1‑141           TTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGTAAACATGGTGAACAATATTTCAGGAATTTAGAGTTCACATGTTTGCAAGAAT                                                                                       <  1:378529/141‑1              GATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGTAAACATGGTGAACAATATTTCAGGAATTTAGAGTTCACATGTTTGCAAGAATGTA                                                                                    <  2:307061/141‑1                                                                                                TTGTAAACATGGTGAACAATATTTCAGGAATTTAGAGTTCACATGTTTGCAAGAATGTATTAACACTGCAGATATAATTGCTACTGGTGGTGGTATTATTGAGAGTGAAGAGGCATTTAATTTTTTGAAAAATCAAAAAAA  <  1:24245/141‑1                                                                                                                                                                                                                                              ATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1653677‑1653774 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgTAAACATGGTGAACAATATTTCAGGAATTTAGAGTTCACATGTTTGCAAGAATGTATTAACACTGCAGATATAATTGCTACTGGTGGTGGTATTATTGAGAGTGAAGAGGCATTTAATTTTTTGAAAAATCAAAAAAA  <  CP000730/1653820‑1653683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.