New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1653774	33 (0.790)	3 (0.070)	3/252	NT	8.5%	coding (205/525 nt)	aroK	shikimate kinase
	?	CP000730	= 1653820	32 (0.790)					coding (159/525 nt)	aroK	shikimate kinase

TTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTAAAATTATTGG  >  CP000730/1653683‑1653960                                                                                                                                          |                                                                                                                                             tttttttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaa                                                                                                                                           <  1:24245‑M2/141‑4 (MQ=255)   tttttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACaaaa                                                                                                                                         <  1:424049/141‑1 (MQ=255)   tttttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACaaaa                                                                                                                                         >  1:380179/1‑141 (MQ=255)    ttttgaaaaatCAAAAAATTAAATGCCTCTTCACTTTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAat                                                                                                                                        >  2:463678/11‑141 (MQ=255)           ttttCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTATg                                                                                                                                 >  2:279165/1‑141 (MQ=255)                  aaaaTTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGt                                                                                                                          <  1:327831/141‑1 (MQ=255)                        aaaTGCGTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACtt                                                                                                                    <  2:298087/141‑1 (MQ=255)                          aTGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTtat                                                                                                                  >  1:275363/1‑141 (MQ=255)                           tGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTtata                                                                                                                 <  2:67721/141‑1 (MQ=255)                                 ttCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTtctc                                                                                                           <  1:59306/141‑1 (MQ=255)                                                 ccaccaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCt                                                                                           >  2:368276/1‑141 (MQ=255)                                                   accaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCtat                                                                                         <  2:161923/141‑1 (MQ=255)                                                   accaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCtat                                                                                         >  1:164128/1‑141 (MQ=255)                                                   accaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCtat                                                                                         <  1:270496/141‑1 (MQ=255)                                                             gCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAAt                                                                               <  1:287694/141‑1 (MQ=255)                                                                aTTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGAt                                                                            >  1:304909/1‑141 (MQ=255)                                                                    tatCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAACTGATAAAt                                                                        >  2:404116/1‑141 (MQ=255)                                                                      tCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAAttt                                                                      >  2:366180/1‑141 (MQ=255)                                                                         gCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGc                                                                   >  1:132294/1‑141 (MQ=255)                                                                             tgtTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCAt                                                               >  2:198824/1‑141 (MQ=255)                                                                                  aTACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAAtatatttctggtatt                                                          >  2:179069/1‑127 (MQ=255)                                                                                   tACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaagaatgtattaacactgcagatataattgctactggtggtggtattattgagagtgaagaggcatttaattttttgaaaaatc                                                         <  2:307061‑M2/141‑86 (MQ=255)                                                                                     cATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACg                                                       <  2:472846/141‑1 (MQ=255)                                                                                      aTTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaagaatgtattaacactgcagatataattgctactggtggtggtattattgagagtgaagaggcatttaattttttgaaaaatcaaa                                                      <  1:378529‑M2/141‑89 (MQ=255)                                                                                      aTTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGt                                                      <  1:140719/141‑1 (MQ=255)                                                                                        tCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTAt                                                    <  1:159815/141‑1 (MQ=255)                                                                                           tGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTa                                                 >  1:188444/1‑141 (MQ=255)                                                                                                aCATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaagaatgtattaacactgcagatataattgctactggtggtggtattattgagagtgaagaggcatttaattttttgaaaaatcaaaaaaacattat                                            >  1:307061‑M2/1‑43 (MQ=255)                                                                                                       aaCTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGAt                                     >  2:83381/1‑141 (MQ=255)                                                                                                            tacaTTCCTTAAATATTTTTCACCATGTTTACAAAATATGTCTGGGATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTAcc                                <  1:29683/138‑1 (MQ=255)                                                                                                             aaaTTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCg                               >  1:312934/1‑141 (MQ=255)                                                                                                                ttCCTGAAATATTGTTCACCATCTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTa                            >  2:492976/1‑141 (MQ=255)                                                                                                                   cTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTAccc                         <  2:8058/141‑1 (MQ=255)                                                                                                                    tGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCa                        <  1:463678/141‑1 (MQ=255)                                                                                                                     gAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCAt                       <  2:450276/141‑1 (MQ=255)                                                                                                                                cACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTa            >  2:235841/1‑141 (MQ=255)                                                                                                                                 aCCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTaa           <  2:257586/141‑1 (MQ=255)                                                                                                                                   cATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTaaaa         >  2:487490/1‑141 (MQ=255)                                                                                                                                     tGTTTACACACTATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATCAATGATAAATTTTGCTCCTCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTAAAatt       <  2:193033/141‑1 (MQ=255)                                                                                                                                       tttACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTAt                                                    <  1:204941/94‑1 (MQ=255)                                                                                                                                       tttACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTAt                                                    >  2:204941/1‑94 (MQ=255)                                                                                                                                       tttACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTAAAattat     >  2:392726/1‑141 (MQ=255)                                                                                                                                          aCAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTAAAATTATTgg  <  2:432098/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                             TTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTACCAATCGTAGATTTACCGGTACCCATGAAACCAATTAAAATTATTGG  >  CP000730/1653683‑1653960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.