New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1653774	33 (0.790)	3 (0.070)	3/252	NT	8.5%	coding (205/525 nt)	aroK	shikimate kinase
	?	CP000730	= 1653820	32 (0.790)					coding (159/525 nt)	aroK	shikimate kinase

TGATTCGACTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTA  >  CP000730/1653636‑1653913                                                                                                                                           |                                                                                                                                            tGATTCGACTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCa                                                                                                                                           >  1:278067/1‑141 (MQ=255)  gATTCGACTATATATAATATCAATATTACAATCTAACCAAAAAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGATCATACATTCTTGCaa                                                                                                                                          <  2:228411/141‑1 (MQ=255)   aTTCGACTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCaaa                                                                                                                                         >  1:175512/1‑141 (MQ=255)      cGACTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTTTTTTTTTTAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACAt                                                                                                                                      >  2:30858/1‑141 (MQ=255)      cGACTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACAt                                                                                                                                      <  2:144908/141‑1 (MQ=255)        aCTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACAtgt                                                                                                                                    >  1:8058/1‑141 (MQ=255)             atataATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTAAATCTAAATAATATCACCACAAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAAct                                                                                                                               >  1:248324/1‑141 (MQ=255)              tataATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCCCTCTCAATAATACCCCCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAACCATGTGAActc                                                                                                                              <  2:8579/141‑1 (MQ=255)                 aataTCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTaa                                                                                                                           <  2:68655/141‑1 (MQ=255)                     tCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTc                                                                                                                       <  2:61094/141‑1 (MQ=255)                       aaTATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCt                                                                                                                     <  1:81195/141‑1 (MQ=255)                        atatTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTg                                                                                                                    >  1:161923/1‑141 (MQ=255)                                aTCTAATCAAATAATGTTTTTTTTATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAACTATTg                                                                                                            <  2:288602/141‑1 (MQ=255)                                aTCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTg                                                                                                            >  1:144796/1‑141 (MQ=255)                                          ataatGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGtaaacatggtgaacaatatttcaggaatttagagttcacatgt                                                                                                  >  1:307061‑M1/1‑98 (MQ=255)                                                tttttttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaa                                                                                            <  1:24245‑M2/141‑4 (MQ=255)                                                  tttttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACaaaa                                                                                          >  1:380179/1‑141 (MQ=255)                                                  tttttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACaaaa                                                                                          <  1:424049/141‑1 (MQ=255)                                                   ttttgaaaaatCAAAAAATTAAATGCCTCTTCACTTTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAat                                                                                         >  2:463678/11‑141 (MQ=255)                                                    tttGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGtaaacatggtgaacaatatttcaggaatttagagttcacatgtttgcaagaat                                                                                        <  1:378529‑M1/141‑54 (MQ=255)                                                       gATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGtaaacatggtgaacaatatttcaggaatttagagttcacatgtttgcaagaatgta                                                                                     <  2:307061‑M1/141‑57 (MQ=255)                                                          ttttCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTATg                                                                                  >  2:279165/1‑141 (MQ=255)                                                                 aaaaTTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGt                                                                           <  1:327831/141‑1 (MQ=255)                                                                       aaaTGCGTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACtt                                                                     <  2:298087/141‑1 (MQ=255)                                                                         aTGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTtat                                                                   >  1:275363/1‑141 (MQ=255)                                                                          tGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTtata                                                                  <  2:67721/141‑1 (MQ=255)                                                                                ttCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTtctc                                                            <  1:59306/141‑1 (MQ=255)                                                                                                ccaccaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCt                                            >  2:368276/1‑141 (MQ=255)                                                                                                  accaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCtat                                          >  1:164128/1‑141 (MQ=255)                                                                                                  accaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCtat                                          <  2:161923/141‑1 (MQ=255)                                                                                                  accaccaGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCtat                                          <  1:270496/141‑1 (MQ=255)                                                                                                            gCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAAt                                <  1:287694/141‑1 (MQ=255)                                                                                                               aTTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGAt                             >  1:304909/1‑141 (MQ=255)                                                                                                                   tatCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAACTGATAAAt                         >  2:404116/1‑141 (MQ=255)                                                                                                                     tCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAAttt                       >  2:366180/1‑141 (MQ=255)                                                                                                                        gCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGc                    >  1:132294/1‑141 (MQ=255)                                                                                                                            tgtTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCAt                >  2:198824/1‑141 (MQ=255)                                                                                                                                 aTACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAAtatatttctggtatt           >  2:179069/1‑127 (MQ=255)                                                                                                                                  tACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaagaatgtattaacactgcagatataattgctactggtggtggtattattgagagtgaagaggcatttaattttttgaaaaatc          <  2:307061‑M2/141‑86 (MQ=255)                                                                                                                                    cATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACg        <  2:472846/141‑1 (MQ=255)                                                                                                                                     aTTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTAcaagaatgtattaacactgcagatataattgctactggtggtggtattattgagagtgaagaggcatttaattttttgaaaaatcaaa       <  1:378529‑M2/141‑89 (MQ=255)                                                                                                                                     aTTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGt       <  1:140719/141‑1 (MQ=255)                                                                                                                                       tCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTAt     <  1:159815/141‑1 (MQ=255)                                                                                                                                         ttGtaaacatggtgaacaatatttcaggaatttagagttcacatgtttgcaagaatgtattaacactgcagatataattgctactggtggtggtattattgagagtgaagaggcatttaattttttgaaaaatcaaaaaaa   <  1:24245‑M1/141‑139 (MQ=255)                                                                                                                                          tGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTa  >  1:188444/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                            TGATTCGACTATATATAATATCAATATTACAATCTAACCAAATAATGTTTTTTTGATTTTTCAAAAAATTAAATGCCTCTTCACTCTCAATAATACCACCACCAGTAGCAATTATATCTGCAGTGTTAATACATTCTTGCAAACATGTGAACTCTAAATTCCTGAAATATTGTTCACCATGTTTACAAAATATTTCTGGTATTGTTAACTTATACTTCTCTTCGATATATGAATCTATATCAATAAATGATAAATTTTGCTCATCTGCAACGTATTTA  >  CP000730/1653636‑1653913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.