New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	553211 =	53 (1.270)	3 (0.080)	3/236	NT	6.2%	intergenic (+178/‑2881)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA
	?	CP000730	553257 =	43 (1.130)					intergenic (+224/‑2835)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA

GAGAAAGCCAGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGAT  >  CP000730/553073‑553350                                                                                                                                           |                                                                                                                                            gagaAAGCCAGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTc                                                                                                                                           >  2:124691/1‑141 (MQ=255)   acgttcattcattctcggatgtggcaccgacagttttggtaaatctatcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                                                                         <  2:64598‑M1/5‑1 (MQ=255)     aaGCCAGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaac                                                                                                                                       <  1:341108/141‑1 (MQ=255)      aGCCAGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGGACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaaca                                                                                                                                      <  2:293958/141‑1 (MQ=255)       tcattcattctcggatgtggcaccgacagttttggtaaatctatcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttccattctaatccggagaaaaaattcttctgtcTTCAaacaa                                                                                                                                     <  2:223850‑M1/9‑1 (MQ=255)         attcattctcggatgtggcaccgacagttttggtaaatctatcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAacaaca                                                                                                                                   >  2:422118‑M1/131‑141 (MQ=255)          aGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAacac                                                                                                                                  >  1:374785/1‑141 (MQ=255)          aGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATGAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAacac                                                                                                                                  <  2:295833/141‑1 (MQ=255)           gTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACt                                                                                                                                 >  1:236068/1‑141 (MQ=255)             tAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTca                                                                                                                               >  1:195207/1‑141 (MQ=255)             tAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTca                                                                                                                               >  1:335083/1‑141 (MQ=255)               aaCGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcaca                                                                                                                             <  1:193122/141‑1 (MQ=255)               aaCGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcaca                                                                                                                             >  1:128480/1‑141 (MQ=255)                aCGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAg                                                                                                                            <  1:449694/141‑1 (MQ=255)                    tGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTAtt                                                                                                                        <  1:289157/141‑1 (MQ=255)                    tGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTAtt                                                                                                                        <  2:439249/141‑1 (MQ=255)                            aGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGt                                                                                                                <  2:304508/141‑1 (MQ=255)                                tttGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGa                                                                                                            >  2:26241/1‑141 (MQ=255)                                  agttttggtaaatctatcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAAt                                                                                                          >  1:21294‑M1/106‑141 (MQ=255)                                   gcaggtatctgatgGTATTAACGTATCTAATATTTGTCCGATTTATGAGACAGCCCCAGTTGGGTATACGCTGCAACCTAACTTTTTCAATTTGTGTGTTGAAATTCAAACGACGCTCACAGTATTACAACTGTTGGGAtg                                                                                                         <  2:20698/132‑1 (MQ=255)                                   gaatgaatATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtg                                                                                                         <  1:344845/141‑1 (MQ=255)                                      ttggtaaatctatcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAAtgttg                                                                                                      >  1:62621‑M1/102‑141 (MQ=255)                                       gaatATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgttgt                                                                                                     <  1:394676/141‑1 (MQ=255)                                        ggtaaatctatcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattctttcatcTGCAAACAACACTCACAGTATTACAACTGTTGGAATgttgtt                                                                                                    >  1:366894‑M1/100‑141 (MQ=255)                                          tatGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTg                                                                                                  <  2:149006/141‑1 (MQ=255)                                                      aaCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAgaagaa                                                                                      >  1:361298/1‑141 (MQ=255)                                                        cGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATg                                                                                    <  1:470534/141‑1 (MQ=255)                                                          tATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGtt                                                                                  <  1:135567/141‑1 (MQ=255)                                                             cTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTac                                                                               >  2:280140/1‑141 (MQ=255)                                                                  atTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                                                                          <  1:450500/141‑1 (MQ=255)                                                                       tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                     >  2:69970/1‑141 (MQ=255)                                                                       tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                     >  1:298903/1‑141 (MQ=255)                                                                       tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                     >  2:69900/1‑141 (MQ=255)                                                                           aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAg                                                                 >  1:128186/1‑141 (MQ=255)                                                                              tgtGAAACAGCACCAGTTGGCTATACTGAGCAACCTAACTTGGCAAAATTGTGGGTAGAAATTCAAACAACACACACATTATTACAACTGTTGGAATGTTGTTCGCATTCACAACAATGTTTCCACCGAATCAGAAAGCaa                                                              >  2:399995/3‑141 (MQ=255)                                                                               aTGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGACGAATGTTTACACCGTATTAGAACGGAAc                                                             <  2:223130/141‑1 (MQ=255)                                                                               aTGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTATTAAATTTGTGTGGTTAAATTCAATCAACACTCACTGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAAc                                                             >  1:429492/1‑141 (MQ=255)                                                                                 gAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa                                                           <  2:241731/141‑1 (MQ=255)                                                                                   aaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATg                                                         >  2:150055/1‑141 (MQ=255)                                                                                                gggTATACTGAGCAACCTAACTTTTGAAATTTGTGTGTTGAAATTCAAACAACACTGACAGTATTACAACTGTTGGACTGTTGCTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACt                                            >  2:495387/1‑141 (MQ=255)                                                                                                 ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                           <  2:144475/141‑1 (MQ=255)                                                                                                  gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACttt                                          >  1:329669/1‑141 (MQ=255)                                                                                                   tataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGGTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTa                                         >  1:479021/1‑141 (MQ=255)                                                                                                       cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                     <  2:403145/141‑1 (MQ=255)                                                                                                           gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                 <  2:236068/141‑1 (MQ=255)                                                                                                           gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                 >  1:279330/1‑141 (MQ=255)                                                                                                           gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                 <  1:463782/141‑1 (MQ=255)                                                                                                             aaCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGata                               <  1:226028/141‑1 (MQ=255)                                                                                                              aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAGGGGGTCCTAGAACTTTAGATGTGGatat                              >  1:447105/1‑141 (MQ=255)                                                                                                               ccTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                             <  2:318239/141‑1 (MQ=255)                                                                                                                  aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                          <  2:298903/141‑1 (MQ=255)                                                                                                                  aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                          >  1:44424/1‑141 (MQ=255)                                                                                                                         tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                   >  1:131246/1‑141 (MQ=255)                                                                                                                         tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                   >  2:486558/1‑141 (MQ=255)                                                                                                                            aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag                <  1:208762/141‑1 (MQ=255)                                                                                                                            aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag                <  1:26241/141‑1 (MQ=255)                                                                                                                            aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag                <  1:134741/141‑1 (MQ=255)                                                                                                                              ttGTGTGTTGAAATTCAAACAAGACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa              <  2:434117/141‑1 (MQ=255)                                                                                                                              ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa              >  1:250518/1‑141 (MQ=255)                                                                                                                              ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa              >  1:269632/1‑141 (MQ=255)                                                                                                                                       gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATa     >  2:449577/1‑141 (MQ=255)                                                                                                                                          aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGAt  <  2:124840/141‑1 (MQ=255)                                                                                                                                          aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGAt  <  2:164255/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                            GAGAAAGCCAGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGAT  >  CP000730/553073‑553350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.