New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	553211 =	53 (1.270)	3 (0.080)	3/236	NT	6.2%	intergenic (+178/‑2881)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA
	?	CP000730	553257 =	43 (1.130)					intergenic (+224/‑2835)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA

AACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAGAATGAATGAACGT  >  CP000730/553126‑553392                                                                                                                                    |                                                                                                                                        aaCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAgaagaa                                                                                                                                >  1:361298/1‑141 (MQ=255)   cGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATg                                                                                                                              <  1:470534/141‑1 (MQ=255)     tATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGtt                                                                                                                            <  1:135567/141‑1 (MQ=255)        cTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTac                                                                                                                         >  2:280140/1‑141 (MQ=255)             atTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                                                                                                                    <  1:450500/141‑1 (MQ=255)                  tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                                                               >  2:69970/1‑141 (MQ=255)                  tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                                                               >  2:69900/1‑141 (MQ=255)                  tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAg                                                                                                               >  1:298903/1‑141 (MQ=255)                      aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAg                                                                                                           >  1:128186/1‑141 (MQ=255)                         tgtGAAACAGCACCAGTTGGCTATACTGAGCAACCTAACTTGGCAAAATTGTGGGTAGAAATTCAAACAACACACACATTATTACAACTGTTGGAATGTTGTTCGCATTCACAACAATGTTTCCACCGAATCAGAAAGCaa                                                                                                        >  2:399995/3‑141 (MQ=255)                          aTGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGACGAATGTTTACACCGTATTAGAACGGAAc                                                                                                       <  2:223130/141‑1 (MQ=255)                          aTGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTATTAAATTTGTGTGGTTAAATTCAATCAACACTCACTGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAAc                                                                                                       >  1:429492/1‑141 (MQ=255)                            gAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa                                                                                                     <  2:241731/141‑1 (MQ=255)                              aaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATg                                                                                                   >  2:150055/1‑141 (MQ=255)                                           gggTATACTGAGCAACCTAACTTTTGAAATTTGTGTGTTGAAATTCAAACAACACTGACAGTATTACAACTGTTGGACTGTTGCTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACt                                                                                      >  2:495387/1‑141 (MQ=255)                                            ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                                                                     <  2:144475/141‑1 (MQ=255)                                             gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACttt                                                                                    >  1:329669/1‑141 (MQ=255)                                              tataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGGTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTa                                                                                   >  1:479021/1‑141 (MQ=255)                                                  cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                                                               <  2:403145/141‑1 (MQ=255)                                                      gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                                                           <  2:236068/141‑1 (MQ=255)                                                      gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                                                           >  1:279330/1‑141 (MQ=255)                                                      gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                                                           <  1:463782/141‑1 (MQ=255)                                                        aaCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGata                                                                         <  1:226028/141‑1 (MQ=255)                                                         aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAGGGGGTCCTAGAACTTTAGATGTGGatat                                                                        >  1:447105/1‑141 (MQ=255)                                                          ccTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                                                                       <  2:318239/141‑1 (MQ=255)                                                             aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                                                                    >  1:44424/1‑141 (MQ=255)                                                             aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                                                                    <  2:298903/141‑1 (MQ=255)                                                                    tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                                                             >  1:131246/1‑141 (MQ=255)                                                                    tAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                                                             >  2:486558/1‑141 (MQ=255)                                                                       aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag                                                          <  1:134741/141‑1 (MQ=255)                                                                       aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag                                                          <  1:208762/141‑1 (MQ=255)                                                                       aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag                                                          <  1:26241/141‑1 (MQ=255)                                                                         ttGTGTGTTGAAATTCAAACAAGACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa                                                        <  2:434117/141‑1 (MQ=255)                                                                         ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa                                                        >  1:250518/1‑141 (MQ=255)                                                                         ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa                                                        >  1:269632/1‑141 (MQ=255)                                                                                  gAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATa                                               >  2:449577/1‑141 (MQ=255)                                                                                     aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGAt                                            <  2:124840/141‑1 (MQ=255)                                                                                     aTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGAt                                            <  2:164255/141‑1 (MQ=255)                                                                                          aacaacattccaacagttgtaatactgtgagtgttgtttgcaGATGAAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAcc                                       >  1:366894‑M2/43‑141 (MQ=255)                                                                                           ACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCa                                      <  1:64598‑M1/141‑1 (MQ=255)                                                                                           ACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCa                                      <  1:159911‑M1/141‑1 (MQ=255)                                                                                            caacattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCaa                                     >  1:62621‑M2/41‑141 (MQ=255)                                                                                             AACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCaaa                                    >  1:409902‑M1/1‑141 (MQ=255)                                                                                               CACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACTCTGGATGAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAAc                                  >  1:31504‑M1/1‑141 (MQ=255)                                                                                               CACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAAc                                  >  2:361298‑M1/1‑141 (MQ=255)                                                                                               CACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAAc                                  >  1:270658‑M1/1‑141 (MQ=255)                                                                                                attccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACt                                 >  1:21294‑M2/37‑141 (MQ=255)                                                                                                       gTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTg                          >  1:354860/1‑141 (MQ=255)                                                                                                        tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCGATATTGTCGGTgg                         >  2:121529/1‑140 (MQ=255)                                                                                                        tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGc                         >  1:75941/1‑141 (MQ=255)                                                                                                             cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGGATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAATACTGTTGGTGCCACAt                    >  2:173309/1‑141 (MQ=255)                                                                                                                 tGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCga                >  2:453452/1‑141 (MQ=255)                                                                                                                       aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAgaatga          >  1:92211/1‑141 (MQ=255)                                                                                                                         tgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAgaatgaat        >  2:422118‑M2/12‑141 (MQ=255)                                                                                                                           ttgtttgaaGACAGAAGAATTTTTTCTCCGGATTAGAATGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAGAatgaatga      <  2:223850‑M2/132‑1 (MQ=255)                                                                                                                               ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAGAATGAATGAACGt  <  2:64598‑M2/136‑1 (MQ=255)                                                                                                                                    |                                                                                                                                        AACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAGAATGAATGAACGT  >  CP000730/553126‑553392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.