New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1697752 =	37 (0.890)	3 (0.080)	3/226	NT	9.0%	intergenic (+8/+37)	rpsT/holA	ribosomal protein S20/possible DNA‑directed DNA polymerase III delta subunit
	?	CP000730	1697788 =	28 (0.770)					intergenic (+44/+1)	rpsT/holA	ribosomal protein S20/possible DNA‑directed DNA polymerase III delta subunit

AATAACGCTGATAATAAAAATGAATTAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAA  >  CP000730/1697613‑1697880                                                                                                                                            |                                                                                                                                 gcgttaggacaagtaagacattatcaacttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaaa                                                                                                                                 >  1:18050‑M1/140‑141 (MQ=255)    ttaggacaggtaagacattatcaacttgatgaattattgaatattaaagatgcttgtgcggaaactgattataaacataaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATa                                                                                                                              >  2:120355‑M1/137‑141 (MQ=255)      aggacaagtaagacattatcaacttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATaaa                                                                                                                            >  1:286045‑M1/135‑141 (MQ=255)        gacaagtaagacattatcaacttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATAAAAg                                                                                                                          >  2:153689‑M1/133‑141 (MQ=255)        cTGATAATAAAAATGAATTAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAg                                                                                                                          <  1:77335/141‑1 (MQ=255)            agtaagacattatcaacttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATAAAAGTTCa                                                                                                                      <  1:421110‑M1/13‑1 (MQ=255)               aagacattatcaacttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAgc                                                                                                                   >  1:65782‑M1/126‑141 (MQ=255)                aaaaaTGAATTAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAgcg                                                                                                                  <  1:147207/141‑1 (MQ=255)                 aaaaTGAATTAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAgcgc                                                                                                                 >  1:409454/1‑141 (MQ=255)                   cattatcaacttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAGCGCAt                                                                                                               >  2:57174‑M1/122‑141 (MQ=255)                      gAATTAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCt                                                                                                            <  1:255298/141‑1 (MQ=255)                         ttagacggCTTTGCAGTTAAGTTCGTAGACAGTTCTGCTCAAAGTCATTTAATAGATTCTGACAAAGCTGACCTTATTAAATCGCAATTAATGAAAGCAAATAAATAATCTTTTTAAATAAAAGTTCACGCGCATGCATGa                                                                                                         >  2:145227/8‑141 (MQ=255)                         ttAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGa                                                                                                         >  2:152879/1‑141 (MQ=255)                           acttgatgaattattgaatattatagatgcttgtgcggaaactgattataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAGCGCATGCTTGAAc                                                                                                       >  1:74594‑M1/114‑141 (MQ=255)                           aGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAAc                                                                                                       <  2:383435/141‑1 (MQ=255)                                 cTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTAt                                                                                                 <  2:377652/141‑1 (MQ=255)                                     gCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTAttttt                                                                                             >  1:118609/1‑141 (MQ=255)                                         ttaagttaGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTtata                                                                                         <  1:233786/141‑1 (MQ=255)                                           aagttaGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATaaa                                                                                       >  2:134002/1‑141 (MQ=255)                                                  tagACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAgaa                                                                                >  2:495909/1‑141 (MQ=255)                                                   agACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAgaat                                                                               <  2:141488/141‑1 (MQ=255)                                                     aCAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAgaatga                                                                             <  1:343179/141‑1 (MQ=255)                                                        aaGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGaata                                                                          >  2:273966/1‑141 (MQ=255)                                                          gctgctCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGaataat                                                                        >  1:177063/1‑141 (MQ=255)                                                           ctgctCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAAtt                                                                       >  1:99443/1‑141 (MQ=255)                                                           ctgctCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAAtt                                                                       >  2:203869/1‑141 (MQ=255)                                                                  aaGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTAt                                                                <  2:177063/141‑1 (MQ=255)                                                                   aGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTAtt                                                               <  1:288822/141‑1 (MQ=255)                                                                   aGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTAtt                                                               >  1:250787/1‑141 (MQ=255)                                                                      aaTTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAAc                                                            <  2:293965/141‑1 (MQ=255)                                                                        tttAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTg                                                          <  1:304782/141‑1 (MQ=255)                                                                            aTACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTa                                                      >  2:26891/1‑141 (MQ=255)                                                                                aTTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCa                                                  >  2:424103/1‑141 (MQ=255)                                                                                 ttCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCat                                                 <  1:41858/141‑1 (MQ=255)                                                                                    aaacaaaGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCatata                                              >  2:832/1‑141 (MQ=255)                                                                                       caaaGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATatga                                           >  1:83166/1‑141 (MQ=255)                                                                                         aaGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATatgatg                                         >  1:352196/1‑141 (MQ=255)                                                                                          aGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATAtgatga                                        <  2:53250/141‑1 (MQ=255)                                                                                              gACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTa                                    >  2:319311/1‑141 (MQ=255)                                                                                                 cGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGt                                 <  1:202154/141‑1 (MQ=255)                                                                                                        aaTCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAAt                          <  2:262787/141‑1 (MQ=255)                                                                                                          ttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTtata                            <  1:363545‑M1/103‑1 (MQ=255)                                                                                                          ttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTtata                            >  2:363545‑M1/35‑137 (MQ=255)                                                                                                                   aTGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATCAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGca               >  1:250380/1‑141 (MQ=255)                                                                                                                       cTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAg           <  2:76514/141‑1 (MQ=255)                                                                                                                            aataaataATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCt      >  1:48137/1‑141 (MQ=255)                                                                                                                                aataatCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTataa  <  1:125522/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                 AATAACGCTGATAATAAAAATGAATTAGTAAGCTTAGCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAA  >  CP000730/1697613‑1697880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.