New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1697752 =	37 (0.890)	3 (0.080)	3/226	NT	9.0%	intergenic (+8/+37)	rpsT/holA	ribosomal protein S20/possible DNA‑directed DNA polymerase III delta subunit
	?	CP000730	1697788 =	28 (0.770)					intergenic (+44/+1)	rpsT/holA	ribosomal protein S20/possible DNA‑directed DNA polymerase III delta subunit

GCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAACGC  >  CP000730/1697649‑1697926                                                                                                                                            |                                                                                                                                           gCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTAttttt                                                                                                                                           >  1:118609/1‑141 (MQ=255)     ttaagttaGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTtata                                                                                                                                       <  1:233786/141‑1 (MQ=255)       aagttaGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATaaa                                                                                                                                     >  2:134002/1‑141 (MQ=255)              tagACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAgaa                                                                                                                              >  2:495909/1‑141 (MQ=255)               agACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAgaat                                                                                                                             <  2:141488/141‑1 (MQ=255)                 aCAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAgaatga                                                                                                                           <  1:343179/141‑1 (MQ=255)                    aaGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGaata                                                                                                                        >  2:273966/1‑141 (MQ=255)                      gctgctCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGaataat                                                                                                                      >  1:177063/1‑141 (MQ=255)                       ctgctCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAAtt                                                                                                                     >  1:99443/1‑141 (MQ=255)                       ctgctCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAAtt                                                                                                                     >  2:203869/1‑141 (MQ=255)                              aaGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTAt                                                                                                              <  2:177063/141‑1 (MQ=255)                               aGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTAtt                                                                                                             >  1:250787/1‑141 (MQ=255)                               aGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTAtt                                                                                                             <  1:288822/141‑1 (MQ=255)                                  aaTTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAAc                                                                                                          <  2:293965/141‑1 (MQ=255)                                    tttAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTg                                                                                                        <  1:304782/141‑1 (MQ=255)                                     tataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaaaataaaagttcaagcgcatgcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTaa                                                                                                           >  2:363545‑M2/104‑137 (MQ=255)                                     tataaacttaaatcatcatatatggataaacagttaatactggaattattcattctatctttataaaaaataaaagttcaagcgcatgcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTaa                                                                                                           <  1:363545‑M2/34‑1 (MQ=255)                                        aTACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTa                                                                                                    >  2:26891/1‑141 (MQ=255)                                            aTTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCa                                                                                                >  2:424103/1‑141 (MQ=255)                                             ttCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCat                                                                                               <  1:41858/141‑1 (MQ=255)                                                aaacaaaGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCatata                                                                                            >  2:832/1‑141 (MQ=255)                                                   caaaGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATatga                                                                                         >  1:83166/1‑141 (MQ=255)                                                     aaGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATatgatg                                                                                       >  1:352196/1‑141 (MQ=255)                                                      aGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATAtgatga                                                                                      <  2:53250/141‑1 (MQ=255)                                                          gACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTa                                                                                  >  2:319311/1‑141 (MQ=255)                                                             cGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGt                                                                               <  1:202154/141‑1 (MQ=255)                                                                    aaTCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAAt                                                                        <  2:262787/141‑1 (MQ=255)                                                                      ttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTtata                                                                          >  2:363545‑M1/35‑137 (MQ=255)                                                                      ttaatactggaattattcattctatctttataaaAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTtata                                                                          <  1:363545‑M1/103‑1 (MQ=255)                                                                               aTGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATCAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGca                                                             >  1:250380/1‑141 (MQ=255)                                                                                   cTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAg                                                         <  2:76514/141‑1 (MQ=255)                                                                                        aataaataATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCt                                                    >  1:48137/1‑141 (MQ=255)                                                                                            aataatCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTataa                                                <  1:125522/141‑1 (MQ=255)                                                                                                          ATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATtca                                  >  1:72001‑M1/1‑141 (MQ=255)                                                                                                                gttcaagcatgcgcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGt                            >  1:74594‑M2/29‑141 (MQ=255)                                                                                                                GTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGt                            >  1:368502‑M1/1‑141 (MQ=255)                                                                                                                   CAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGa                         <  1:234949‑M1/141‑1 (MQ=255)                                                                                                                      GCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATaa                      <  1:392834‑M1/141‑1 (MQ=255)                                                                                                                       CGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAAt                     <  1:247005‑M1/141‑1 (MQ=255)                                                                                                                       CGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAAt                     >  1:202206‑M1/1‑141 (MQ=255)                                                                                                                        atgcgcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATg                    >  2:57174‑M2/21‑141 (MQ=255)                                                                                                                         cATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGt                   >  2:138027/1‑141 (MQ=255)                                                                                                                           tGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCt                 <  2:445557/141‑1 (MQ=255)                                                                                                                            gcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCtt                >  1:65782‑M2/17‑141 (MQ=255)                                                                                                                               tgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACt             <  1:421110‑M2/128‑1 (MQ=255)                                                                                                                                   cttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTc         >  2:153689‑M2/10‑141 (MQ=255)                                                                                                                                     tttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCt       >  1:286045‑M2/8‑141 (MQ=255)                                                                                                                                       tatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTATGTTTATAATCAGTTTCCGCACAAGCATCTTTAATATTCAATAATTCATCAAGTTGATAATGTCTTACCTGTCCTaa     >  2:120355‑M2/6‑141 (MQ=255)                                                                                                                                          ttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAACGc  >  1:18050‑M2/3‑141 (MQ=255)                                                                                                                                            |                                                                                                                                           GCAGTTAAGTTAGTAGACAAAGCTGCTCAAAGTAATTTAATACATTCAAACAAAGCTGACCGTATTAAATCACAATTAATGACTGCAAATAAATAATCTTTTTAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAACGC  >  CP000730/1697649‑1697926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.