New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 462756120 (1.320)5 (0.060) 4/260 12.6 4.7% intergenic (+15/+88) USA300HOU_0436/USA300HOU_0437 hypothetical protein/hypothetical protein
?CP000730 = 462805 91 (1.070)intergenic (+64/+39) USA300HOU_0436/USA300HOU_0437 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 120 total aligned reads displayed.

TGCATATCATAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCTTGTTTAG  >  CP000730/462618‑462890
                                                                                                                                          |                                                                                                                                      
tGCATATCATAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTa                                                                                                                                      >  2:591546/1‑141 (MQ=255)
     atCATAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAatgat                                                                                                                                 <  1:265394/141‑1 (MQ=255)
      tCATAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAatgatg                                                                                                                                <  2:252590/141‑1 (MQ=255)
        aTAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTa                                                                                                                              >  1:108461/1‑141 (MQ=255)
        aTAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTa                                                                                                                              <  1:86533/141‑1 (MQ=255)
        aTAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTa                                                                                                                              <  1:86543/141‑1 (MQ=255)
             ttACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAAAAACTTAATGATGTAATGaa                                                                                                                         >  1:584489/1‑141 (MQ=255)
               aCATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAAt                                                                                                                       <  1:592324/141‑1 (MQ=255)
               aCATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAAt                                                                                                                       >  1:614544/1‑141 (MQ=255)
                cATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAAtt                                                                                                                      >  1:448363/1‑141 (MQ=255)
                cATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAAtt                                                                                                                      >  1:622973/1‑141 (MQ=255)
                 aTGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGTACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTa                                                                                                                     >  1:471113/1‑141 (MQ=255)
                   ggTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGt                                                                                                                   >  2:702697/1‑141 (MQ=255)
                    gTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTg                                                                                                                  <  2:474071/141‑1 (MQ=255)
                        tAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGtt                                                                                                              >  2:33201/1‑141 (MQ=255)
                          aaaTTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTaa                                                                                                            >  2:310473/1‑141 (MQ=255)
                            aTTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATc                                                                                                          >  1:225812/1‑141 (MQ=255)
                            aTTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATc                                                                                                          >  1:455359/1‑141 (MQ=255)
                              tGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCAc                                                                                                        <  2:614544/141‑1 (MQ=255)
                              tGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCAc                                                                                                        <  1:350628/141‑1 (MQ=255)
                                  ggCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGAc                                                                                                    >  2:109748/1‑141 (MQ=255)
                                        gATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTAc                                                                                              <  2:48536/141‑1 (MQ=255)
                                           aCTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTc                                                                                           >  1:640160/1‑141 (MQ=255)
                                            cTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCa                                                                                          >  1:411987/1‑141 (MQ=255)
                                            cTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCa                                                                                          >  1:877347/1‑141 (MQ=255)
                                              aaCGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCAtt                                                                                        >  2:820238/1‑141 (MQ=255)
                                               aCGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTg                                                                                       <  1:191219/141‑1 (MQ=255)
                                               aCGGATTATCGACTACCTGGTTTTCTCCATTAGGAGCAAAGAAAGTTGACCGTCAGGCCACCAAATTAGAACAAAAATTAAATAAAACAGCTTAAAGATGTAATGAAATTAGTGCGTCAACAACTGATTTccccgcccttg                                                                                       >  2:735719/1‑131 (MQ=255)
                                                 ggATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAg                                                                                     <  1:94909/141‑1 (MQ=255)
                                                   aTTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCt                                                                                   <  1:959025/141‑1 (MQ=255)
                                                      cccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                >  1:528260/1‑141 (MQ=255)
                                                      cccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                <  1:119337/141‑1 (MQ=255)
                                                      cccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                >  2:177112/1‑141 (MQ=255)
                                                      cccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                >  2:486016/1‑141 (MQ=255)
                                                      cccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                >  2:655472/1‑141 (MQ=255)
                                                      cccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                >  2:655397/1‑141 (MQ=255)
                                                      cccGATTACCTGATTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtt                                                                                >  2:723838/1‑141 (MQ=255)
                                                       ccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGttt                                                                               >  2:591853/1‑141 (MQ=255)
                                                       ccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGttt                                                                               <  2:274518/141‑1 (MQ=255)
                                                       ccGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGttt                                                                               >  2:218847/1‑141 (MQ=255)
                                                        cGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtttt                                                                              >  1:515953/1‑141 (MQ=255)
                                                        cGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGAATTGTACGTCATTGAGCTGtttt                                                                              >  1:273627/1‑141 (MQ=255)
                                                        agATTACATGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtttt                                                                              <  2:720951/140‑1 (MQ=255)
                                                          aTTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGtttttt                                                                            <  2:469397/141‑1 (MQ=255)
                                                            tACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTtgt                                                                          <  2:225812/141‑1 (MQ=255)
                                                             aCCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTtgtg                                                                         <  2:331074/141‑1 (MQ=255)
                                                             aCCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTtgtg                                                                         <  1:691484/141‑1 (MQ=255)
                                                              ccTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACTTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGGCATTGAGCTGTTTTTtgttt                                                                        >  2:153359/1‑139 (MQ=255)
                                                                tGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCtt                                                                      >  1:313880/1‑141 (MQ=255)
                                                                tGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCtt                                                                      <  1:743687/141‑1 (MQ=255)
                                                                 ggTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCttt                                                                     >  2:121758/1‑141 (MQ=255)
                                                                  gTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTg                                                                    <  2:799458/141‑1 (MQ=255)
                                                                        tCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGGAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACaa                                                              <  2:62212/141‑1 (MQ=255)
                                                                        tCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACaa                                                              <  1:971798/141‑1 (MQ=255)
                                                                        tCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACaa                                                              >  1:259071/1‑141 (MQ=255)
                                                                            ttAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCa                                                          >  1:21136/1‑141 (MQ=255)
                                                                            ttAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCa                                                          <  2:1013560/141‑1 (MQ=255)
                                                                              aGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCatt                                                        >  2:715655/1‑141 (MQ=255)
                                                                                  gagaggaaagTTGGACGTAAGGCACCAAAATTAGAAAAATAATTAAAGAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGGGCTTTGTTACAAAGCATTATTg                                                    <  2:545711/136‑1 (MQ=255)
                                                                                  gAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTg                                                    <  1:499947/141‑1 (MQ=255)
                                                                                   aaaaGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCGTTATTGa                                                   >  2:960520/1‑141 (MQ=255)
                                                                                    aaagaaagTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGaa                                                  >  1:177199/1‑141 (MQ=255)
                                                                                      agaaagTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAatt                                                <  2:230909/141‑1 (MQ=255)
                                                                                         aagTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAatttat                                             <  1:447112/141‑1 (MQ=255)
                                                                                          agTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAatttatt                                            >  1:924018/1‑141 (MQ=255)
                                                                                           gTTGAACGTAAGGCACCAAAATTAGAACAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGTTTTGTCTGTAAGCATGTTTGAatttattt                                           <  2:264942/141‑1 (MQ=255)
                                                                                           gTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAttttattt                                           >  2:432280/1‑141 (MQ=255)
                                                                                           gTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAatttattt                                           >  1:815633/1‑141 (MQ=255)
                                                                                            ttGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTAtttt                                          >  1:110312/1‑141 (MQ=255)
                                                                                              gAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTAc                                        >  1:633653/1‑141 (MQ=255)
                                                                                                 cGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACgtg                                     <  2:142454/141‑1 (MQ=255)
                                                                                                    aaGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTc                                  <  1:452696/141‑1 (MQ=255)
                                                                                                     aGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCa                                 >  1:1040199/1‑141 (MQ=255)
                                                                                                     aGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCa                                 >  1:321747/1‑141 (MQ=255)
                                                                                                     aGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCa                                 >  2:149591/1‑141 (MQ=255)
                                                                                                     aGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCa                                 <  2:511303/141‑1 (MQ=255)
                                                                                                       gCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCata                               >  1:886147/1‑141 (MQ=255)
                                                                                                             aaaTTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGa                         <  2:455359/141‑1 (MQ=255)
                                                                                                                ttAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAAc                      >  1:391020/1‑141 (MQ=255)
                                                                                                                ttAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAAc                      <  2:663855/141‑1 (MQ=255)
                                                                                                                    aaaaaTAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCa                  >  1:778582/1‑141 (MQ=255)
                                                                                                                    aaaaaTAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCa                  >  1:244164/1‑141 (MQ=255)
                                                                                                                     aaaaTAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCaa                 <  1:725380/141‑1 (MQ=255)
                                                                                                                     aaaaTAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCaa                 >  1:586674/1‑141 (MQ=255)
                                                                                                                       aataatTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAg               <  2:419313/141‑1 (MQ=255)
                                                                                                                        ataatTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGc              >  2:585666/1‑141 (MQ=255)
                                                                                                                        ataatTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTNATTTTACGTGTTCATATTTTGAAACATCAAAGc              <  1:121758/141‑1 (MQ=255)
                                                                                                                         taatTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGcc             <  1:519271/141‑1 (MQ=255)
                                                                                                                          aatTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGTGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCg            <  1:775157/141‑1 (MQ=255)
                                                                                                                           atTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGt           <  2:877347/141‑1 (MQ=255)
                                                                                                                           atTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGt           >  1:608639/1‑141 (MQ=255)
                                                                                                                            ttAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTc          <  2:322022/141‑1 (MQ=255)
                                                                                                                            ttAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTc          <  2:883908/141‑1 (MQ=255)
                                                                                                                             taaataaaACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCt         <  1:670006/141‑1 (MQ=255)
                                                                                                                             taaataaaACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCt         <  1:268948/141‑1 (MQ=255)
                                                                                                                              aaatacaACAGCTTAATGATGTAATGAAATTAGTGAGTGAATCACTGACTTCTACGCCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCtt        >  1:557276/1‑141 (MQ=255)
                                                                                                                              aaataaaACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGACACATCAAAGCCGTCtt        >  2:643229/1‑141 (MQ=255)
                                                                                                                                 taaaACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCTTGtt     <  1:200205/141‑1 (MQ=255)
                                                                                                                                   aaaCAGCTTAATGACGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCTTGTTTa   >  2:593355/1‑141 (MQ=255)
                                                                                                                                    aaCAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCTTGTTTAg  <  2:406623/141‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                      
TGCATATCATAAATTACATGGTGATAAAATTGTCGGCTACGATACTAACGGATTCCCGATTACCTGGTTTTATCCATTAGGTGAAAAGAAAGTTGAACGTAAGGCACCAAAATTAGAAAAATAATTAAATAAAACAGCTTAATGATGTAATGAAATTAGTGAGTTAATCACTGACTTCTACGTCATTGAGCTGTTTTTTGTGCTTTGTTACAAAGCATTATTGAATTTATTTTACGTGTTCATATTTTGAAACATCAAAGCCGTCTTGTTTAG  >  CP000730/462618‑462890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.