| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2030617 = | 43 (1.110) | 3 (0.080) | 3/262 | 5.8 | 7.2% | coding (70/987 nt) | USA300HOU_1885 | hypothetical membrane protein |
| ? | CP000730 | 2030676 = | 37 (1.010) | coding (129/987 nt) | USA300HOU_1885 | hypothetical membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCAAAGCCTGCACCAATTACCGTAGCAGGTAATCTACGATAACCTTTAATAAGTGATGCCTTGGCAGTTGGTTCAATTGTGACTACAGCTGTTAAAATGGCATAGATGGGTGTTAAATCTAGTGCCATACAAAAGACAGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2030760‑2030617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagctgtAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACATATGCA > CP000730/2030676‑2030808 TGCAAAGCCTGCACCAATTACCGTAGCAGGTAATCTACGATAACCTTTAATAAGTGATGCCTTGGCAGTTGGTTCAATTGTGACTACAGCTGTTCAAATGGCATAGACGGGTGTTAAATCTAGTGCCATACAAAAGACAGC > 1:19723/1‑141TGCAAAGCCTGCACCAATTACCGTAGCAGGTAATCTACGATAACCTTTAATAAGTGATGCCTTGGCAGTTGGTTCAATTGTGACTACAGCTGTTAAAATGGCATAGATGGGTGTTAAATCTAGTGCCATACAAAAGACAGC > 1:19571/1‑141 GCAAAGCCTGCACCAATTACCGTAGCAGGTAATCTACGATAACCTTTAATAAGTGATGCCTTGGCAGTTGGTTCAATTGTGACTACAGCTGTTAAAATGGCATAGATGGGTGTTAAATCTAGTGCCATACAAAAGACAGCT > 2:8619/1‑141 CTGTTAAAATGGCATAGATGGGTGTTAAATCTAGTGCCATACAAAAGACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAG > 1:256357/1‑141 TAAAATGGCATAGATGGGTGTTAAATCTAGTGCCATACAAAAGACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTCATTGGTGCAGGCTTTGCCGTATT > 1:201400/1‑141 GGCATAGATGGGTGTTAAATCTAGTGCCATTTTA‑‑‑ACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATA > 1:435217/1‑141 ACAGCTGTAGTCACAATTGAACCAACTTCCAAGGCATCACTTATTTAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGAAGGCTTTGCAGTATTATTTACATATTTATTCGCAGATCAATCAACTTTTACATATGCA > 2:126122/1‑141 TGCAAAGCCTGCACCAATTACCGTAGCAGGTAATCTACGATAACCTTTAATAAGTGATGCCTTGGCAGTTGGTTCAATTGTGACTACAGCTGTTAAAATGGCATAGATGGGTGTTAAATCTAGTGCCATACAAAAGACAGCTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2030760‑2030617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagctgtAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACATATGCA > CP000730/2030676‑2030808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |