New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2030617 =	43 (1.110)	3 (0.080)	3/262	5.8	7.2%	coding (70/987 nt)	USA300HOU_1885	hypothetical membrane protein
	?	CP000730	2030676 =	37 (1.010)					coding (129/987 nt)	USA300HOU_1885	hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACATATGCA  >  CP000730/2030539‑2030808                                                                                                                                          |                                                                                                                                     ggTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTc                                                                                                                                   <  2:164186/141‑1 (MQ=255)   ttAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTcac                                                                                                                                 <  1:124465/141‑1 (MQ=255)         aaTGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGa                                                                                                                           >  2:234159/1‑141 (MQ=255)           tGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAAc                                                                                                                         >  1:63901/1‑141 (MQ=255)            gAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAAcc                                                                                                                        <  2:112535/141‑1 (MQ=255)                gATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACt                                                                                                                    >  1:62469/1‑141 (MQ=255)                       ggTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAgg                                                                                                             >  1:409140/1‑141 (MQ=255)                               cATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACtt                                                                                                     >  1:175150/1‑141 (MQ=255)                                      ttGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAg                                                                                              <  1:38812/141‑1 (MQ=255)                                        ggTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGt                                                                                            <  2:390739/141‑1 (MQ=255)                                                   aaTTAAAACTGGTATTGCCATTTTTTTTTTTTTTTTCTTTTGTATAGCACTAGATTTAATACCCATCTATGCCATTTTAACAGCTTTAGTCACAATTGAACTAACTGCCAAGTCATCACTTATTAAAGGTTTTCATAGttt                                                                                 >  2:244111/1‑141 (MQ=255)                                                    aTTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGtaaatattctaat                                                                                >  2:115405/1‑129 (MQ=255)                                                    aTTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTa                                                                                <  1:386397/141‑1 (MQ=255)                                                     ttAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTAc                                                                               >  1:57217/1‑141 (MQ=255)                                                         aaCTGTTATTGCCATTTTTTTAACCGCGGTCTTTTGTAAGGCACTAGATTTAACCCCCATCTACGCCATTTTAACAGCCGTAGTCACAATTGAACCAGCTTCCTGGGCACCATTTATTAAAGGTTATCGGAGATTACCTGc                                                                           <  2:156031/141‑1 (MQ=255)                                                          aCTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCt                                                                          <  2:107385/141‑1 (MQ=255)                                                            tGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTAc                                                                        <  1:396799/141‑1 (MQ=255)                                                              gTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACgg                                                                      >  1:189521/1‑141 (MQ=255)                                                                     cATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTgg                                                               >  1:331275/1‑141 (MQ=255)                                                                     cATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTgg                                                               >  1:331253/1‑141 (MQ=255)                                                                            ttAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGc                                                        >  1:213017/1‑141 (MQ=255)                                                                            ttAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGc                                                        >  2:430670/1‑141 (MQ=255)                                                                                 aGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGc                                                   <  2:8619/141‑1 (MQ=255)                                                                                  gCTGTCTTTTGTATGGCACTAGATTTAACACCCGTCTATGCCATTTGAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCa                                                  <  1:19723/141‑1 (MQ=255)                                                                                  gCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCa                                                  <  1:19571/141‑1 (MQ=255)                                                                                       cTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTAGCAGtatt                                             >  2:360439/1‑141 (MQ=255)                                                                                        ttttGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCCACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGATCCGGTAATTGGTGAAGGCTTTGCAGtatta                                            >  2:25856/1‑141 (MQ=255)                                                                                            gTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTa                                        >  1:113671/1‑141 (MQ=255)                                                                                            gTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATAATTTa                                        >  2:366036/1‑141 (MQ=255)                                                                                                ggCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACata                                    <  1:16680/141‑1 (MQ=255)                                                                                                      aGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAGAGGTTGTCGTTGAGTCACCGTGATGGTTATTGGCGCAGGCTTTGCAGTATTATTTACAtatttatt                              >  1:18045/1‑141 (MQ=255)                                                                                                      aGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACAtatttatt                              >  2:447306/1‑141 (MQ=255)                                                                                                                   aTCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGatcaatca                 <  1:32462/141‑1 (MQ=255)                                                                                                                        tGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCttt            >  2:183104/1‑141 (MQ=255)                                                                                                                             ttttAACAGCTGTAGGCACAATCTAACCAACTGCCTTGGCATCACTTATTAAAGTTTATCGTATATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACat       <  1:89104/141‑1 (MQ=255)                                                                                                                               ttAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACatat     <  1:147063/141‑1 (MQ=255)                                                                                                                               ttAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACatat     >  1:348334/1‑141 (MQ=255)                                                                                                                                  aCAGCTGTAGTCACAATTGAACCAACTTCCAAGGCATCACTTATTTAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGAAGGCTTTGCAGTATTATTTACATATTTATTCGCAGATCAATCAACTTTTACATATGCa  >  2:126122/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                     GGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGCTTTGCAGTATTATTTACATATTTATTCGGCGATCAATCACCTTTTACATATGCA  >  CP000730/2030539‑2030808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.