New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2030617 =	43 (1.110)	3 (0.080)	3/262	5.8	7.2%	coding (70/987 nt)	USA300HOU_1885	hypothetical membrane protein
	?	CP000730	2030676 =	37 (1.010)					coding (129/987 nt)	USA300HOU_1885	hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCCAATGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGC  >  CP000730/2030482‑2030754                                                                                                                                        |                                                                                                                                          taacAATGGACGATACTGTTATTATAAAGCGCGCGCTAAGATTATAGGATGTTTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTCCCATAACAATTAAAACTGGTATTGCCAATGCTTTAACACCt                                                                                                                                      >  2:16623/4‑141 (MQ=255)  tCCAATGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTg                                                                                                                                     <  2:372607/141‑1 (MQ=255)   ccAATGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGt                                                                                                                                    >  1:112535/1‑141 (MQ=255)   ccAATGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGt                                                                                                                                    <  2:154787/141‑1 (MQ=255)     aaTGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCt                                                                                                                                  <  2:60422/141‑1 (MQ=255)       tGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCttt                                                                                                                                <  2:326222/141‑1 (MQ=255)       tGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCttt                                                                                                                                >  1:413251/1‑141 (MQ=255)       tGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCttt                                                                                                                                <  2:438491/141‑1 (MQ=255)           cGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTa                                                                                                                            >  1:80921/1‑141 (MQ=255)               aCTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGc                                                                                                                        <  1:337038/141‑1 (MQ=255)                 tattattatAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCACTGGTACAACCCTTCAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCAc                                                                                                                      <  1:267808/141‑1 (MQ=255)                    tattatAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAg                                                                                                                   <  1:435223/141‑1 (MQ=255)                     attatAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGa                                                                                                                  >  2:147063/1‑141 (MQ=255)                      ttatAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGAt                                                                                                                 <  2:226621/141‑1 (MQ=255)                              cgctcgctAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACAcc                                                                                                         <  1:317614/141‑1 (MQ=255)                                   gctAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCt                                                                                                    >  2:349174/1‑141 (MQ=255)                                            ttACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCAttt                                                                                           <  1:235573/141‑1 (MQ=255)                                            ttACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCAttt                                                                                           >  2:221024/1‑141 (MQ=255)                                                     ttAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTg                                                                                  >  1:330122/1‑141 (MQ=255)                                                      tAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGt                                                                                 >  2:46773/1‑141 (MQ=255)                                                      tAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGt                                                                                 <  2:413251/141‑1 (MQ=255)                                                          ggTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTc                                                                             <  2:164186/141‑1 (MQ=255)                                                            ttAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTcac                                                                           <  1:124465/141‑1 (MQ=255)                                                                  aaTGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGa                                                                     >  2:234159/1‑141 (MQ=255)                                                                    tGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAAc                                                                   >  1:63901/1‑141 (MQ=255)                                                                     gAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAAcc                                                                  <  2:112535/141‑1 (MQ=255)                                                                         gATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACt                                                              >  1:62469/1‑141 (MQ=255)                                                                                ggTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAgg                                                       >  1:409140/1‑141 (MQ=255)                                                                                        cATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACtt                                               >  1:175150/1‑141 (MQ=255)                                                                                               ttGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAg                                        <  1:38812/141‑1 (MQ=255)                                                                                                 ggTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGt                                      <  2:390739/141‑1 (MQ=255)                                                                                                            aaTTAAAACTGGTATTGCCATTTTTTTTTTTTTTTTCTTTTGTATAGCACTAGATTTAATACCCATCTATGCCATTTTAACAGCTTTAGTCACAATTGAACTAACTGCCAAGTCATCACTTATTAAAGGTTTTCATAGttt                           >  2:244111/1‑141 (MQ=255)                                                                                                             aTTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGtaaatattctaat                          >  2:115405/1‑129 (MQ=255)                                                                                                             aTTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTa                          <  1:386397/141‑1 (MQ=255)                                                                                                              ttAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTAc                         >  1:57217/1‑141 (MQ=255)                                                                                                                  aaCTGTTATTGCCATTTTTTTAACCGCGGTCTTTTGTAAGGCACTAGATTTAACCCCCATCTACGCCATTTTAACAGCCGTAGTCACAATTGAACCAGCTTCCTGGGCACCATTTATTAAAGGTTATCGGAGATTACCTGc                     <  2:156031/141‑1 (MQ=255)                                                                                                                   aCTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCt                    <  2:107385/141‑1 (MQ=255)                                                                                                                     tGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTAc                  <  1:396799/141‑1 (MQ=255)                                                                                                                       gTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACgg                >  1:189521/1‑141 (MQ=255)                                                                                                                              cATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTgg         >  1:331253/1‑141 (MQ=255)                                                                                                                              cATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTgg         >  1:331275/1‑141 (MQ=255)                                                                                                                                     ttAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGc  >  2:430670/1‑141 (MQ=255)                                                                                                                                     ttAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGc  >  1:213017/1‑141 (MQ=255)                                                                                                                                        |                                                                                                                                          TTCCAATGTACGATACTATTATTATAAAGCGCTCGCTAAGATTTTACGATGATTAGAGGTTAAAAAATGAACGATCAATGGTATAAACATTTAATTGGTGCCAGAACAATTAAAACTGGTATTGCCATTTTTTTAACAGCTGTCTTTTGTATGGCACTAGATTTAACACCCATCTATGCCATTTTAACAGCTGTAGTCACAATTGAACCAACTGCCAAGGCATCACTTATTAAAGGTTATCGTAGATTACCTGCTACGGTAATTGGTGCAGGC  >  CP000730/2030482‑2030754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.