New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1545880	33 (0.850)	3 (0.080)	3/258	5.8	8.7%	intergenic (‑183/+39)	engA/rpsA	GTP‑binding protein EngA/ribosomal protein S1
	?	CP000730	= 1545890	32 (0.890)					intergenic (‑193/+29)	engA/rpsA	GTP‑binding protein EngA/ribosomal protein S1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACTGTGTATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGAT  >  CP000730/1545745‑1546016                                                                                                                                        |                                                                                                                                         gaCTGTGTATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATc                                                                                                                                     <  1:269567/141‑1 (MQ=255)     gtgtATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATaa                                                                                                                                 <  1:258174/141‑1 (MQ=255)        tATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAATTACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACa                                                                                                                              >  2:415124/1‑141 (MQ=255)         aTTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACAt                                                                                                                             >  2:433775/1‑141 (MQ=255)                  gAGTTTATTACTGTACTGATAAAAATCTGCACTTAAATCTTTATCTTTTTAAACACTTAGTTAAATTTGTCCTCGTTATCATTCCGAGTATATTTTGTTACATAAACATACTCCACATGCAATCATCAACATGTGGAGTTg                                                                                                                    <  2:11601/141‑1 (MQ=255)                      ttattaCTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACta                                                                                                                >  1:149310/1‑141 (MQ=255)                          taCTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACtattaa                                                                                                            <  1:198437/141‑1 (MQ=255)                              gTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACtattaaatat                                                                                                        <  2:342758/141‑1 (MQ=255)                                  tGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACtattaaatattaaa                                                                                                    <  2:323463/141‑1 (MQ=255)                                        aaaTCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAg                                                                                              >  1:317932/1‑141 (MQ=255)                                                             tCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATc                                                                         >  1:125993/1‑141 (MQ=255)                                                             tCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATc                                                                         >  2:73139/1‑141 (MQ=255)                                                                  ttAAACACTTATTTAAATTTTTCCATGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATATTTTAAGATTTTTAAGTTTATCACCaa                                                                    <  2:153498/141‑1 (MQ=255)                                                                       cacTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCata                                                               <  1:426468/141‑1 (MQ=255)                                                                        acTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAATTTTATCACCAATCatat                                                              >  1:21220/1‑141 (MQ=255)                                                                           tAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGc                                                           <  1:210574/141‑1 (MQ=255)                                                                                    ttGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAAttgttg                                                  <  1:436450/141‑1 (MQ=255)                                                                                    ttGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAAttgttg                                                  <  2:149310/141‑1 (MQ=255)                                                                                     tGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTgg                                                 >  1:238057/1‑141 (MQ=255)                                                                                       tCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGAt                                               >  2:350828/1‑141 (MQ=255)                                                                                                  aTTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTAtcttcttct                                    >  2:159389/1‑141 (MQ=255)                                                                                                  aTTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTGTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTAtcttcttcc                                    >  2:308965/1‑140 (MQ=255)                                                                                                   ttCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATcttcttctt                                   >  2:372260/1‑141 (MQ=255)                                                                                                    tCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCttcttcttc                                  <  2:337990/141‑1 (MQ=255)                                                                                                                ttGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTa                      <  1:168273/141‑1 (MQ=255)                                                                                                                         aaaaaTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGt             <  2:60023/141‑1 (MQ=255)                                                                                                                         aaaaaTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGt             <  2:239416/141‑1 (MQ=255)                                                                                                                           aaaTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCg           <  2:238057/141‑1 (MQ=255)                                                                                                                             aTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTa         >  1:230604/1‑141 (MQ=255)                                                                                                                              tACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAg        >  2:364367/1‑141 (MQ=255)                                                                                                                                   cacaTGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGa   >  1:85053/1‑141 (MQ=255)                                                                                                                                   cacaTGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGa   >  1:85042/1‑141 (MQ=255)                                                                                                                                    acaTGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCACTAGTCGTAGAAGGAt  <  1:445636/141‑1 (MQ=255)                                                                                                                                        |                                                                                                                                         GACTGTGTATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGAT  >  CP000730/1545745‑1546016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.