New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1545880	33 (0.850)	3 (0.080)	3/258	5.8	8.7%	intergenic (‑183/+39)	engA/rpsA	GTP‑binding protein EngA/ribosomal protein S1
	?	CP000730	= 1545890	32 (0.890)					intergenic (‑193/+29)	engA/rpsA	GTP‑binding protein EngA/ribosomal protein S1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGATCACTTTCAACAACA  >  CP000730/1545752‑1546030                                                                                                                                           |                                                                                                                                             tATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAATTACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACa                                                                                                                                            >  2:415124/1‑141 (MQ=255)  aTTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACAt                                                                                                                                           >  2:433775/1‑141 (MQ=255)           gAGTTTATTACTGTACTGATAAAAATCTGCACTTAAATCTTTATCTTTTTAAACACTTAGTTAAATTTGTCCTCGTTATCATTCCGAGTATATTTTGTTACATAAACATACTCCACATGCAATCATCAACATGTGGAGTTg                                                                                                                                  <  2:11601/141‑1 (MQ=255)               ttattaCTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACta                                                                                                                              >  1:149310/1‑141 (MQ=255)                   taCTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACtattaa                                                                                                                          <  1:198437/141‑1 (MQ=255)                       gTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACtattaaatat                                                                                                                      <  2:342758/141‑1 (MQ=255)                           tGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACtattaaatattaaa                                                                                                                  <  2:323463/141‑1 (MQ=255)                                 aaaTCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAg                                                                                                            >  1:317932/1‑141 (MQ=255)                                                      tCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATc                                                                                       >  2:73139/1‑141 (MQ=255)                                                      tCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATc                                                                                       >  1:125993/1‑141 (MQ=255)                                                           ttAAACACTTATTTAAATTTTTCCATGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATATTTTAAGATTTTTAAGTTTATCACCaa                                                                                  <  2:153498/141‑1 (MQ=255)                                                                cacTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCata                                                                             <  1:426468/141‑1 (MQ=255)                                                                 acTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAATTTTATCACCAATCatat                                                                            >  1:21220/1‑141 (MQ=255)                                                                    tAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGc                                                                         <  1:210574/141‑1 (MQ=255)                                                                             ttGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAAttgttg                                                                <  2:149310/141‑1 (MQ=255)                                                                             ttGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAAttgttg                                                                <  1:436450/141‑1 (MQ=255)                                                                              tGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTgg                                                               >  1:238057/1‑141 (MQ=255)                                                                                tCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGAt                                                             >  2:350828/1‑141 (MQ=255)                                                                                           aTTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTAtcttcttct                                                  >  2:159389/1‑141 (MQ=255)                                                                                           aTTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTGTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTAtcttcttcc                                                  >  2:308965/1‑140 (MQ=255)                                                                                            ttCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATcttcttctt                                                 >  2:372260/1‑141 (MQ=255)                                                                                             tCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCttcttcttc                                                <  2:337990/141‑1 (MQ=255)                                                                                                         ttGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTa                                    <  1:168273/141‑1 (MQ=255)                                                                                                                  aaaaaTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGt                           <  2:239416/141‑1 (MQ=255)                                                                                                                  aaaaaTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGt                           <  2:60023/141‑1 (MQ=255)                                                                                                                    aaaTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCg                         <  2:238057/141‑1 (MQ=255)                                                                                                                      aTACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTa                       >  1:230604/1‑141 (MQ=255)                                                                                                                       tACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAg                      >  2:364367/1‑141 (MQ=255)                                                                                                                            cacaTGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGa                 >  1:85053/1‑141 (MQ=255)                                                                                                                            cacaTGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGa                 >  1:85042/1‑141 (MQ=255)                                                                                                                             acaTGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCACTAGTCGTAGAAGGAt                <  1:445636/141‑1 (MQ=255)                                                                                                                                   aaTCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTaa                                                                                                       <  1:94514/48‑1 (MQ=255)                                                                                                                                   aaTCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTaa                                                                                                       >  2:94514/1‑48 (MQ=255)                                                                                                                                           aCATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGATCACTTTCAacaaca  <  1:433775/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             TATTCAAAATGAGTTTATTACTGTAATGATAAAAATCAGCACTTAAAACTTTATCTTTTTAAACACTTAGTTAAATTTGTCCACGTTATCATTCCGAGTATATTTTGTTACATAAAAATACTCCACATGCAATCATAAACATGTGGAGTTGACTATTAAATATTAAATTATAGTTTAAGATTTTTAAGTTTATCACCAATCATATCGCCAATTGTTGGATTATCTTCTTCTTCGTTTTCTAAGTACGCCTTAGTCGTAGAAGGATCACTTTCAACAACA  >  CP000730/1545752‑1546030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.