New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	562451 =	34 (1.010)	4 (0.130)	3/250	4.9	10.6%	intergenic (+386/+138)	rrf3/USA300HOU_0510	5S ribosomal RNA/GntR family transcriptional regulator
	?	CP000730	562497 =	37 (1.220)					intergenic (+432/+92)	rrf3/USA300HOU_0510	5S ribosomal RNA/GntR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAATTATAAAGTAACACTTCTTTGATAAAAGTTAGTGTTACTTATGCAATAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/562603‑562451 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGCGGT  >  CP000730/562497‑562631                                                                                                                                                                                                                                                                                                  TTAATTATAAAGTAACACTTCTTTGATAAAAGTTAGTGTTACTTATGCAATAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGT                                                                                                                                                     <  1:285650/141‑1    ATTATAAAGTAACAATTCTTTGATAAAAGTTAGTGTTACTTATGCAATAGCTTGTCAATTGTATAATCATTAAGTTCCTCTTCGTATTTCAACAAAGTATATAAAAGAGCAGTAGGCGCATTTTCAATTAGATTCCGTCgt                                                                                                                                                  <  2:221719/141‑3         AAAGTAACACTTCTTTGATAAAAGTTAGTGTTACTTATGCAATAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCGTTTTCAATTAGATACCGTCTTACTGC                                                                                                                                             >  2:301606/1‑141          AAGTAACACTTCTTAGATAAAAGTTAGTGTTACTAATGCAATAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATCAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCT                                                                                                                                            >  2:314558/1‑141                                                                                                              GAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTACCGTGTATCAAAGAAGTGTTACT                                        >  1:299107/1‑141                                                                                                                GCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTT                                      >  1:152872/1‑141                                                                                                                GCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTT                                      >  2:268008/1‑141                                                                                                                     AAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAAT                                 >  2:216835/1‑141                                                                                                                                                 tCTGCTCTTTTTTATACTTTTTTCAATTACGAAAAGCATATTAATTATGATACTATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGC     <  1:275691/140‑1                                                                                                                                                 ACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGC     <  1:221262/141‑1                                                                                                                                                    GCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGCGGT  <  1:378647/141‑1                                                                                                                                                                                                                                                                                                  TTAATTATAAAGTAACACTTCTTTGATAAAAGTTAGTGTTACTTATGCAATAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/562603‑562451 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGCGGT  >  CP000730/562497‑562631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.