New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	562451 =	34 (1.010)	4 (0.130)	3/250	4.9	10.6%	intergenic (+386/+138)	rrf3/USA300HOU_0510	5S ribosomal RNA/GntR family transcriptional regulator
	?	CP000730	562497 =	37 (1.220)					intergenic (+432/+92)	rrf3/USA300HOU_0510	5S ribosomal RNA/GntR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGCGGT  >  CP000730/562364‑562631                                                                                                                                      |                                                                                                                                       cGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAGGTCAAAATATTGGATAAATAGATGAGTGCAGGAAGACTGGAGCTAATTGAAAATGATCTTACTGCTCTTTTATGTAc                                                                                                                                 >  1:134417/1‑141 (MQ=255) cGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATATTACTGCTCTTTTATATAc                                                                                                                                 <  2:58076/141‑1 (MQ=255)  gATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACt                                                                                                                                <  1:239714/141‑1 (MQ=255)          aaGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGaa                                                                                                                        <  2:120328/141‑1 (MQ=255)            gTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAAt                                                                                                                      <  1:223506/141‑1 (MQ=255)              aTGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATAc                                                                                                                    <  1:1481/141‑1 (MQ=255)                      cTTTAATTTTGTGTTTATATCAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGCAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGa                                                                                                            >  1:81142/1‑141 (MQ=255)                          aaTTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGTAaatt                                                                                                        >  2:242083/1‑141 (MQ=255)                          aaTTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaatt                                                                                                        >  1:14684/1‑141 (MQ=255)                          aaTTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaatt                                                                                                        >  2:387826/1‑141 (MQ=255)                             tttGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaattaat                                                                                                     >  2:210230/1‑141 (MQ=255)                               tgtgTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAattaatta                                                                                                   <  1:355779/141‑1 (MQ=255)                                gtgtTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAattat                                                                                                  >  2:272022/1‑141 (MQ=255)                                gtggctatataAATTTAAATTGATATCATCGAACACTAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTCATTGAAAATGATCTTACTGCTCTTTTAGATACTTTATTGAAATACAAAAAGGACATTAagtat                                                                                                  >  2:76371/6‑141 (MQ=255)                                   tttATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATtattat                                                                                               <  1:262809/141‑1 (MQ=255)                                   attATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATtattat                                                                                               <  2:134417/140‑1 (MQ=255)                                       tataAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACaa                                                                                           >  2:58235/1‑141 (MQ=255)                                           aaTTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                                                                       >  1:98855/1‑141 (MQ=255)                                               tAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATATAAATAAAAATGGTCTTACTGCACTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAg                                                                                   >  1:332971/1‑141 (MQ=39)                                                  aaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTa                                                                                >  1:40322/1‑141 (MQ=255)                                                   aTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAt                                                                               >  1:160985/1‑141 (MQ=255)                                                                 aaCAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAacac                                                                 >  2:244220/1‑141 (MQ=255)                                                                  aCAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACt                                                                <  1:212667/141‑1 (MQ=255)                                                                             tataAAGAGATAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCa                                                     <  1:26087/141‑1 (MQ=255)                                                                                aaaTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaag                                                  <  2:121044/141‑1 (MQ=255)                                                                                 aaTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaaga                                                 <  1:244764/141‑1 (MQ=255)                                                                                           agCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTGATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATTAGTAACACTAACTTTTATCTAAGAAGTGTTACtt                                       <  2:314558/141‑1 (MQ=255)                                                                                            gCAGTAAGACGGTATCTAATTGAAAACGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACttt                                      <  2:301606/141‑1 (MQ=255)                                                                                                 acgACGGAATCTAATTGAAAATGCGCCTACTGCTCTTTTATATACTTTGTTGAAATACGAAGAGGAACTTAATGATTATACAATTGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAATTGTTACTTTAtaat                                 >  2:221719/3‑141 (MQ=21)                                                                                                    aCGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTAtaattaa                              >  1:285650/1‑141 (MQ=255)                                                                                                     cGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTAtaattaat                             <  1:269358/141‑1 (MQ=255)                                                                                                     aggTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATAGAAAAAAAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTAtaattaat                             <  2:155327/140‑1 (MQ=255)                                                                                                      ggTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATg                            <  1:81997/141‑1 (MQ=255)                                                                                                         aTCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGAtt                         >  2:362268/1‑141 (MQ=255)                                                                                                            tAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTtta                      >  1:204233/1‑141 (MQ=255)                                                                                                              aTTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTttatt                    <  1:272022/141‑1 (MQ=255)                                                                                                                      tGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTc            <  2:160985/141‑1 (MQ=255)                                                                                                                             tcTGCTCTTTTTTATACTTTTTTCAATTACGAAAAGCATATTAATTATGATACTATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGc     <  1:275691/140‑1 (MQ=21)                                                                                                                             aCTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGc     <  1:221262/141‑1 (MQ=255)                                                                                                                                gCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGCGGt  <  1:378647/141‑1 (MQ=255)                                                                                                                                      |                                                                                                                                       CGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGTGTTACTTTATAATTAATGATTTTATTAGAGCGTCTACATGCGGT  >  CP000730/562364‑562631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.