New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 562451 =34 (1.010)4 (0.130) 3/250 4.9 10.6% intergenic (+386/+138) rrf3/USA300HOU_0510 5S ribosomal RNA/GntR family transcriptional regulator
?CP000730 562497 = 37 (1.220)intergenic (+432/+92) rrf3/USA300HOU_0510 5S ribosomal RNA/GntR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACGTTCCGCTAGAGTAGAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA  >  CP000730/562313‑562584
                                                                                                                                          |                                                                                                                                     
tACGTTCCGCTAGAGTAGAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGagaag                                                                                                                                     >  2:212667/1‑141 (MQ=255)
     tCCGCTAGAGTAGAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAg                                                                                                                                >  2:81997/1‑141 (MQ=255)
     tCCGCTAGAGTAGAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAg                                                                                                                                <  2:186639/141‑1 (MQ=255)
                 gAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATc                                                                                                                    >  1:191761/1‑141 (MQ=255)
                 gAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATc                                                                                                                    >  1:241521/1‑141 (MQ=255)
                  aaCTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCt                                                                                                                   >  1:221643/1‑141 (MQ=255)
                                     ataatGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACt                                                                                                >  1:78131/1‑141 (MQ=255)
                                       aatGTACGCTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAAGGTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAGATGATCTtgctgc                                                                                              <  2:15500/141‑1 (MQ=255)
                                                   cGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAGGTCAAAATATTGGATAAATAGATGAGTGCAGGAAGACTGGAGCTAATTGAAAATGATCTTACTGCTCTTTTATGTAc                                                                                  >  1:134417/1‑141 (MQ=255)
                                                   cGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATATTACTGCTCTTTTATATAc                                                                                  <  2:58076/141‑1 (MQ=255)
                                                    gATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACt                                                                                 <  1:239714/141‑1 (MQ=255)
                                                            aaGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGaa                                                                         <  2:120328/141‑1 (MQ=255)
                                                              gTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAAt                                                                       <  1:223506/141‑1 (MQ=255)
                                                                aTGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATAc                                                                     <  1:1481/141‑1 (MQ=255)
                                                                        cTTTAATTTTGTGTTTATATCAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGCAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGa                                                             >  1:81142/1‑141 (MQ=255)
                                                                            aaTTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGTAaatt                                                         >  2:242083/1‑141 (MQ=255)
                                                                            aaTTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaatt                                                         >  1:14684/1‑141 (MQ=255)
                                                                            aaTTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaatt                                                         >  2:387826/1‑141 (MQ=255)
                                                                               tttGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaattaat                                                      >  2:210230/1‑141 (MQ=255)
                                                                                 tgtgTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAattaatta                                                    <  1:355779/141‑1 (MQ=255)
                                                                                  gtgtTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAattat                                                   >  2:272022/1‑141 (MQ=255)
                                                                                  gtggctatataAATTTAAATTGATATCATCGAACACTAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTCATTGAAAATGATCTTACTGCTCTTTTAGATACTTTATTGAAATACAAAAAGGACATTAagtat                                                   >  2:76371/6‑141 (MQ=255)
                                                                                     tttATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATtattat                                                <  1:262809/141‑1 (MQ=255)
                                                                                     attATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATtattat                                                <  2:134417/140‑1 (MQ=255)
                                                                                         tataAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACaa                                            >  2:58235/1‑141 (MQ=255)
                                                                                             aaTTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                        >  1:98855/1‑141 (MQ=255)
                                                                                                 tAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATATAAATAAAAATGGTCTTACTGCACTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAg                                    >  1:332971/1‑141 (MQ=39)
                                                                                                    aaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTa                                 >  1:40322/1‑141 (MQ=255)
                                                                                                     aTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAt                                >  1:160985/1‑141 (MQ=255)
                                                                                                                   aaCAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAacac                  >  2:244220/1‑141 (MQ=255)
                                                                                                                    aCAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACt                 <  1:212667/141‑1 (MQ=255)
                                                                                                                               tataAAGAGATAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCa      <  1:26087/141‑1 (MQ=255)
                                                                                                                                  aaaTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaag   <  2:121044/141‑1 (MQ=255)
                                                                                                                                   aaTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaaga  <  1:244764/141‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                     
TACGTTCCGCTAGAGTAGAACTGGAAATGATAATTTAATAATGTACACTTTCGATTGTCTAAGTATGTACAACTTTAATTTTGTGTTTATATAAATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA  >  CP000730/562313‑562584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.