| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2538221 = | 40 (1.190) | 4 (0.130) | 3/262 | 5.1 | 9.6% | coding (266/687 nt) | gpmA2 | phosphoglycerate mutase |
| ? | CP000730 | 2538241 = | 37 (1.160) | coding (246/687 nt) | gpmA2 | phosphoglycerate mutase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAAAGTAAGAGAAAATAACATTGCCATCGATGTAGCTTTTACATCGTTATTAACACGTGCTTTAGATACAACGCATTATATTTTAACTGAATCTAAACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAACGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2538365‑2538221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgccaGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTCT > CP000730/2538241‑2538375 AAAAAGTAAGAGAAAATAACATTGCCATCGATGTAGCTTTTACATCGTTATTAACACGTGCTTTAGATACAACGCATTATATTTTAACTGAATCTAAACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAAC < 1:119741/141‑1AAAAAGTAAGAGAAAATAACATTGCCATCGATGTAGCTTTTACATCGTTATTAACACGTGCTTTAGATACAACGCATTATATTTTAACTGAATCTAAACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAAC < 1:151362/141‑1 AGTAAGAGAAAATAACATTGCCATCGATGTAGCTTTTACATCGTTATTAACACGTGCTTTAGATACAACGCATTATATTTTAACTGAATCTAAACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAACGCCA > 2:91959/1‑141 ACACGTGCTTTAGATACAACGCATTATATTTTAACTGAATCTAAACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAA > 1:134175/1‑141 AACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTA < 2:134175/141‑1 TAAATGAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCAC > 1:112751/1‑141 TAAATGAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTGCAC > 1:22126/1‑141 AACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTC > 2:142346/1‑141 ACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTATATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAGTAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTtt < 2:324861/141‑3 AAAAAGTAAGAGAAAATAACATTGCCATCGATGTAGCTTTTACATCGTTATTAACACGTGCTTTAGATACAACGCATTATATTTTAACTGAATCTAAACAACAATGGATTCCTGTATATAAAAGCTGGCGTTTAAATGAACGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2538365‑2538221‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgccaGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTCT > CP000730/2538241‑2538375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |