New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2538221 =	40 (1.190)	4 (0.130)	3/262	5.1	9.6%	coding (266/687 nt)	gpmA2	phosphoglycerate mutase
	?	CP000730	2538241 =	37 (1.160)					coding (246/687 nt)	gpmA2	phosphoglycerate mutase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCAGCTAAGTAAGCTTCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACT  >  CP000730/2538081‑2538361                                                                                                                                             |                                                                                                                                             gaTCAGCTAAGTAAGCTTCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGt                                                                                                                                              <  2:148716/141‑1 (MQ=255)        taagtaagCTTCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTc                                                                                                                                       <  2:88277/141‑1 (MQ=255)         aagtaagCTTCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGttta                                                                                                                                      <  2:3467/141‑3 (MQ=255)                 ttCACGTTGTTCTTCGGTTTCAGCGGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCATCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGtttaaatgaacg                                                                                                                              <  2:151779/141‑11 (MQ=255)                 ttCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACg                                                                                                                              <  2:142365/141‑1 (MQ=255)                 ttCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACg                                                                                                                              <  1:336363/141‑1 (MQ=255)                        tgttCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCtt                                                                                                                       <  1:67051/141‑1 (MQ=255)                         gttCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCttt                                                                                                                      >  1:189482/1‑141 (MQ=255)                               cGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGAACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTtatata                                                                                                                >  1:324861/1‑141 (MQ=255)                                       gcagGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATc                                                                                                        >  1:257033/1‑141 (MQ=255)                                       gcagGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATc                                                                                                        >  1:154205/1‑141 (MQ=255)                                         agGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCa                                                                                                      <  1:61841/141‑1 (MQ=255)                                              gtTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCAttgtt                                                                                                 >  2:69418/1‑141 (MQ=255)                                              gtTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCAttgtt                                                                                                 <  2:148113/141‑1 (MQ=255)                                                    catcatAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAg                                                                                           >  2:46082/1‑141 (MQ=255)                                                               cgacgCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTaaa                                                                                >  1:180987/1‑141 (MQ=255)                                                                           tGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGtt                                                                    >  2:28536/1‑141 (MQ=255)                                                                           tGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGtt                                                                    <  1:218131/141‑1 (MQ=255)                                                                               ctagTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTACATTCAGTTAAAATATAATGCGTTGTAt                                                                >  2:278751/4‑141 (MQ=255)                                                                               cTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTAt                                                                <  2:139523/141‑1 (MQ=255)                                                                                 tGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCt                                                              <  2:147823/141‑1 (MQ=255)                                                                                           cAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACgtg                                                    >  1:122059/1‑141 (MQ=255)                                                                                               ttCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTtaa                                                <  2:135453/141‑1 (MQ=255)                                                                                                 cTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTtaata                                              >  2:143855/1‑141 (MQ=255)                                                                                                  ttttCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTtaataa                                             >  2:215355/1‑141 (MQ=255)                                                                                                   tttCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAAc                                            >  2:248304/1‑141 (MQ=255)                                                                                                    ttCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACg                                           >  2:279633/1‑141 (MQ=255)                                                                                                      cTAGCGTCATTTTTATTTAAGCCTTGCAATTCACCATTGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTTGATTCAGTTAAAATATAATGCGTTGTATCTAATGCACGTGTTAATAATGAt                                         <  2:73573/141‑1 (MQ=255)                                                                                                        aGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGt                                       <  2:154205/141‑1 (MQ=255)                                                                                                        aGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGt                                       >  2:384576/1‑141 (MQ=255)                                                                                                          catcatCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTaa                                     >  1:177097/1‑141 (MQ=255)                                                                                                            tcatcTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTaaaa                                   >  2:43750/1‑141 (MQ=255)                                                                                                              atcTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGc                                 <  1:228184/141‑1 (MQ=255)                                                                                                               tcTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCt                                <  1:248304/141‑1 (MQ=255)                                                                                                                               gCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGt                >  2:380930/1‑141 (MQ=255)                                                                                                                                cAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGtt               <  2:346413/141‑1 (MQ=255)                                                                                                                                      accaTAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTtc         <  1:234793/141‑1 (MQ=255)                                                                                                                                       ccaTAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAg                                                                                                             <  2:64152/40‑1 (MQ=255)                                                                                                                                       ccaTAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAg                                                                                                             >  1:64152/1‑40 (MQ=255)                                                                                                                                            gTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTAc   >  2:299817/1‑141 (MQ=255)                                                                                                                                             tGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACt  <  2:91959/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             GATCAGCTAAGTAAGCTTCACGTTGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACT  >  CP000730/2538081‑2538361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.