New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2538221 =	40 (1.190)	4 (0.130)	3/262	5.1	9.6%	coding (266/687 nt)	gpmA2	phosphoglycerate mutase
	?	CP000730	2538241 =	37 (1.160)					coding (246/687 nt)	gpmA2	phosphoglycerate mutase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTCTAGTCGC  >  CP000730/2538104‑2538381                                                                                                                                          |                                                                                                                                             tgttCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCtt                                                                                                                                           <  1:67051/141‑1 (MQ=255)  gttCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCttt                                                                                                                                          >  1:189482/1‑141 (MQ=255)        cGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGAACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTtatata                                                                                                                                    >  1:324861/1‑141 (MQ=255)                gcagGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATc                                                                                                                            >  1:257033/1‑141 (MQ=255)                gcagGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATc                                                                                                                            >  1:154205/1‑141 (MQ=255)                  agGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCa                                                                                                                          <  1:61841/141‑1 (MQ=255)                       gtTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCAttgtt                                                                                                                     <  2:148113/141‑1 (MQ=255)                       gtTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCAttgtt                                                                                                                     >  2:69418/1‑141 (MQ=255)                             catcatAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAg                                                                                                               >  2:46082/1‑141 (MQ=255)                                        cgacgCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTaaa                                                                                                    >  1:180987/1‑141 (MQ=255)                                                    tGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGtt                                                                                        <  1:218131/141‑1 (MQ=255)                                                    tGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGtt                                                                                        >  2:28536/1‑141 (MQ=255)                                                        ctagTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTACATTCAGTTAAAATATAATGCGTTGTAt                                                                                    >  2:278751/4‑141 (MQ=255)                                                        cTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTAt                                                                                    <  2:139523/141‑1 (MQ=255)                                                          tGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCt                                                                                  <  2:147823/141‑1 (MQ=255)                                                                    cAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACgtg                                                                        >  1:122059/1‑141 (MQ=255)                                                                        ttCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTtaa                                                                    <  2:135453/141‑1 (MQ=255)                                                                          cTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTtaata                                                                  >  2:143855/1‑141 (MQ=255)                                                                           ttttCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTtaataa                                                                 >  2:215355/1‑141 (MQ=255)                                                                            tttCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAAc                                                                >  2:248304/1‑141 (MQ=255)                                                                             ttCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACg                                                               >  2:279633/1‑141 (MQ=255)                                                                               cTAGCGTCATTTTTATTTAAGCCTTGCAATTCACCATTGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTTGATTCAGTTAAAATATAATGCGTTGTATCTAATGCACGTGTTAATAATGAt                                                             <  2:73573/141‑1 (MQ=255)                                                                                 aGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGt                                                           >  2:384576/1‑141 (MQ=255)                                                                                 aGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGt                                                           <  2:154205/141‑1 (MQ=255)                                                                                   catcatCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTaa                                                         >  1:177097/1‑141 (MQ=255)                                                                                     tcatcTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTaaaa                                                       >  2:43750/1‑141 (MQ=255)                                                                                       atcTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGc                                                     <  1:228184/141‑1 (MQ=255)                                                                                        tcTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCt                                                    <  1:248304/141‑1 (MQ=255)                                                                                                        gCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGt                                    >  2:380930/1‑141 (MQ=255)                                                                                                         cAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGtt                                   <  2:346413/141‑1 (MQ=255)                                                                                                               accaTAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTtc                             <  1:234793/141‑1 (MQ=255)                                                                                                                ccaTAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAg                                                                                                                                 >  1:64152/1‑40 (MQ=255)                                                                                                                ccaTAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAg                                                                                                                                 <  2:64152/40‑1 (MQ=255)                                                                                                                     gTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTAc                       >  2:299817/1‑141 (MQ=255)                                                                                                                      tGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACt                      <  2:91959/141‑1 (MQ=255)                                                                                                                          gTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACttttt                  >  1:151362/1‑141 (MQ=255)                                                                                                                          gTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACttttt                  >  1:119741/1‑141 (MQ=255)                                                                                                                             taaatgaaCGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCAc               >  1:112751/7‑141 (MQ=255)                                                                                                                             taaatgaaCGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTGCAc               >  1:22126/7‑141 (MQ=255)                                                                                                                                   aaCGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGctc         >  2:142346/1‑141 (MQ=255)                                                                                                                                    aCGCCAGCTTTTATATACAGGAATCCATTGTTGTTTATATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAGTAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGcttt        <  2:324861/141‑3 (MQ=255)                                                                                                                                          gCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTCTAGTCGc  <  2:122059/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                             TGTTCTTCGGTTTCAGCAGGTGGTTTCACATCATAAGAACGACGCCAAATATGTACTTGTTCTTCTCCAAATTCTTTTCTAGCATCATCTTTATTTAAGCCTTGCAATCCACCATAGTGGCGTTCATTTAAACGCCAGCTTTTATATACAGGAATCCATTGTTGTTTAGATTCAGTTAAAATATAATGCGTTGTATCTAAAGCACGTGTTAATAACGATGTAAAAGCTACATCGATGGCAATGTTATTTTCTCTTACTTTTTCACCTGCTCTAGTCGC  >  CP000730/2538104‑2538381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.