New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1822717 =60 (0.770)3 (0.040) 3/238 NT 5.5% intergenic (+38/+208) USA300HOU_1697/ackA possible universal stress protein/acetate kinase
?CP000730 1822745 = 49 (0.680)intergenic (+66/+180) USA300HOU_1697/ackA possible universal stress protein/acetate kinase

TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCACTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1822866‑1822717
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACA  >  CP000730/1822745‑1822882
                                                                                                                                                                                                                                                                                                
TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACCATAAAAAATTAAGTGCAGAAAGTTG                                                                                                                                                     <  1:471406/141‑1
TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTG                                                                                                                                                     <  1:403308/141‑1
 TTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGC                                                                                                                                                    <  1:766724/141‑1
 TTTTGAATTTTTTGAAAATTAACGAGTGTAGTGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGAGTATTAAAACATTATTAAGTGAGTTTTAATAATAAAAAATAAAAATCAAAGAGCAGAAAGTTGC                                                                                                                                                    <  2:306788/141‑1
   TTGTATTGTTTGAAAATTAATTAGTGTACTGTCTCTTTTCACGAATATCTTAAATAATTAAGTAGTCGAAGAAGATTATCAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCAC                                                                                                                                                  >  1:609616/1‑141
   TTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCAC                                                                                                                                                  <  2:249334/141‑1
         TGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCACTTGGTT                                                                                                                                            >  1:32010/1‑141
                      ACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTAT                                                                                                                               <  1:917722/141‑1
                                 GTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTC                                                                                                                    >  2:821979/1‑141
                                 GTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAAAATTATTAAGTGAGTTTTATTTATAAATAATAAAAAACCAAGTGCAGAAAGTGGAACTGGGTTTTTTATTGTTTCTAAATAAAACTa                                                                                                                    >  1:821979/1‑140
                                                                                                                                      AAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCG               >  1:301555/1‑141
                                                                                                                                           TGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAC          <  2:147554/141‑1
                                                                                                                                           TGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTAC          <  1:751905/141‑1
                                                                                                                                            GCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTCAATAATGTTTTCATAATCTTCTTCGACTACTTAATCCTTTAAGATATTCGTGAAACGAGACACTACACTAGTTAATCTCCAAACAATACAAAAAGCGCCTACC         >  2:900826/1‑141
                                                                                                                                            GCACTTGGTTTTTTATTGTTTATAAATAAAACTCAATTAATAATGTTTTCATAATCTTCTTCTACTACTTAATTCTTTAAGATATTCGTGAGAAGAGACATTACACTAGTTAATTTTCAAACATTACAAAACGCGCCAACC         >  2:133106/1‑141
                                                                                                                                                 TGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTA    <  1:54303/141‑1
                                                                                                                                                   GTTTTTTATTGTTTATAAATAAAACCCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACA  <  2:590617/141‑1
                                                                                                                                                                                                                                                                                                
TTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAAGAATTAAGTAGTCGAAGAAGATTATGAAAACATTATTAAGTGAGTTTTATTTATAAACAATAAAAAACCAAGTGCAGAAAGTTGCACTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1822866‑1822717
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacttggttTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACA  >  CP000730/1822745‑1822882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.