New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1822717 =60 (0.770)3 (0.040) 3/238 NT 5.5% intergenic (+38/+208) USA300HOU_1697/ackA possible universal stress protein/acetate kinase
?CP000730 1822745 = 49 (0.680)intergenic (+66/+180) USA300HOU_1697/ackA possible universal stress protein/acetate kinase

ATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACA  >  CP000730/1822579‑1822857
                                                                                                                                          |                                                                                                                                            
tgtaggaggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgggttttatttataaacaataaaaAAc                                                                                                                                            <  2:590617‑M1/3‑1 (MQ=255)
aTGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAAc                                                                                                                                            >  2:325296/1‑141 (MQ=255)
  taggaggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCa                                                                                                                                          <  1:54303‑M1/5‑1 (MQ=255)
  gcgcCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAACATTAAATATAGATGATCCTTAGATAACTACTTGCACATTACGAACCa                                                                                                                                          >  2:32010/1‑141 (MQ=255)
     ccATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAgg                                                                                                                                       >  1:152008/1‑140 (MQ=255)
       ggttggcgcgttttgtaatgtttgaaaattaactagtgtaatgtctcttctcacgaatatcttaaagaattaagtagtagaagaagattatgaaaacattattaattgagttttatttataaacaataaaaAACCAAGTGc                                                                                                                                     >  2:133106‑M1/132‑141 (MQ=255)
       ggtaggcgctttttgtattgtttggagattaactagtgtagtgtctcgtttcacgaatatcttaaaggattaagtagtcgaagaagattatgaaaacattattgagtgagttttatttataaacaataaaaAACCAAGTGc                                                                                                                                     >  2:900826‑M1/132‑141 (MQ=255)
       aTGTGACGTGTTAGTGGTTCGTACTGAAGAGTTACCAGCAGACTTACAACCACATGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGc                                                                                                                                     <  1:789271/141‑1 (MQ=255)
        gtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCa                                                                                                                                    <  1:751905‑M1/11‑1 (MQ=255)
        gtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCa                                                                                                                                    <  2:147554‑M1/11‑1 (MQ=255)
             cgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCAACttt                                                                                                                               >  1:301555‑M1/126‑141 (MQ=255)
             cctgtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCagaaag                                                                                                                               <  1:861848/139‑6 (MQ=255)
             cGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAGCTACTTGATCATTATGAACCAAGTGCagaaag                                                                                                                               <  1:559753/141‑6 (MQ=255)
             cGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCagaaag                                                                                                                               <  1:353653/141‑6 (MQ=255)
             cGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACttt                                                                                                                               <  2:139911/141‑1 (MQ=255)
               ggtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCt                                                                                                                             <  2:93663/140‑1 (MQ=255)
                gtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTg                                                                                                                            <  2:563241/141‑1 (MQ=255)
                   atatgttCGTACTGAATAGCTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCAc                                                                                                                         <  2:699930/138‑1 (MQ=255)
                   aGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTACAACTACCTGATCATTAGACTGCCACTGGATCATTATGAACCAAGTGCAACTTTCTGCAc                                                                                                                         <  1:222244/141‑1 (MQ=255)
                   aGTTGTTCGAACAGAAGAGTTACCAGCACACTACCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCAc                                                                                                                         <  2:308371/141‑1 (MQ=255)
                           gTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtttt                                                                                                                 >  2:808929/1‑141 (MQ=255)
                             aCTGAATAGTGACCAGCAGATTTTCAACTACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtttttt                                                                                                               <  2:30033/141‑1 (MQ=255)
                              cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGCTAATTTGAGGACTACGTGATCATTATGAGCCAAGTGCAACTTTCTGCACTTGGttttttt                                                                                                              >  1:178196/1‑140 (MQ=255)
                              cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGtgttttt                                                                                                              >  1:707642/1‑140 (MQ=255)
                              cTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTa                                                                                                              >  1:764306/1‑141 (MQ=255)
                                 aaGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTAttt                                                                                                           >  2:353382/1‑140 (MQ=255)
                                        aCCAGCAGACTTACAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTataa                                                                                                    <  2:157652/141‑1 (MQ=255)
                                         ccAGCAGACGTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTataaa                                                                                                   <  1:465600/141‑1 (MQ=255)
                                              agACTACCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATaaaa                                                                                              <  2:599191/141‑1 (MQ=255)
                                               gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                             >  2:40075/1‑141 (MQ=255)
                                               aaCTTCCAACCAAAAGTTGCAACAATTTAATTACGTTAAAAATATCAAAATTAAATATAGATGATCATTAGTTAACTACTTGACCATTATGAACCAAGTGCAACTTTCTGCACTTGGTGTTTTATTGTTTATAAAGAAAAc                                                                                             <  2:780901/140‑1 (MQ=255)
                                                aCTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACt                                                                                            <  1:393283/141‑1 (MQ=255)
                                                  ttCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGAGCATTAGATAGCTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATATATAAAACTcc                                                                                          <  2:163950/141‑2 (MQ=255)
                                                       aCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaa                                                                                     >  1:478549/1‑141 (MQ=255)
                                                        ccACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTTCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                    <  1:577276/141‑1 (MQ=255)
                                                        ccACAAGTTGCAACAACTCAATTACGTGAAAAATATAAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                    >  2:924821/1‑141 (MQ=255)
                                                        ccACAAATAGCAACGGCACAATTACGTAAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTTCAACTTTCTGCGTTTGTTTTTTTATTGTTTATAACTTAAACTTACTtaaa                                                                                    >  2:86259/1‑140 (MQ=255)
                                                        agacaAGTAGCAACAACTGGATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAGGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaat                                                                                    >  2:86117/3‑141 (MQ=255)
                                                           caAGTAGTAACAACTAAATTACGTTAAAAATATAAAAATTAAATTTCGCTGATCATTAGATAACTACTTGATCATTATGAAACAAGTGCAACTTTCTGCACTTGGTTTTTTAGTGTTTATAAATAAAACTCACTTaataat                                                                                 <  1:923835/141‑1 (MQ=255)
                                                           aaaGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTaataat                                                                                 <  2:768173/140‑1 (MQ=255)
                                                                      aacTCAATTACGTTAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTATGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAAt                                                                      <  2:54545/141‑1 (MQ=255)
                                                                                cGTAAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGac                                                            <  1:900775/141‑1 (MQ=255)
                                                                                 gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                           <  2:766693/141‑1 (MQ=255)
                                                                                 gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                           >  2:505931/1‑141 (MQ=255)
                                                                                    aaaaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGactact                                                        <  2:478549/141‑1 (MQ=255)
                                                                                     aaaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTCATAATGTTTTCATAATCTTCTTAGACTACtt                                                       >  2:431711/1‑141 (MQ=255)
                                                                                         tatCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGCTTTCATAATCTTCTTCGACTACTTAAtt                                                   >  1:655156/1‑141 (MQ=255)
                                                                                           tCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCt                                                 >  2:490972/1‑141 (MQ=255)
                                                                                               aaTTAAACAGAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTaa                                             <  2:175792/141‑1 (MQ=255)
                                                                                                 ttAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGa                                           <  2:336244/141‑1 (MQ=255)
                                                                                                    aaTATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGatat                                        >  2:35212/1‑141 (MQ=255)
                                                                                                     atatAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGAGAtt                                       >  1:650234/1‑141 (MQ=255)
                                                                                                        tcgatgatCATTAGATAACTACTTGATCATTATGAATCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCGTAATCTTCTTCGACTACTTAATTATTTAAGATATTCGt                                    <  1:524500/139‑1 (MQ=255)
                                                                                                        taGATGATCATTAGATAACTACTTGATCATTATGAACCTAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGt                                    <  1:613511/141‑1 (MQ=255)
                                                                                                                cATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAagag                            <  2:655156/141‑1 (MQ=255)
                                                                                                                  tagttttatttagaaacaataaaaAACCCAGTTCCACTTTCTGCACTTGGTTTTTTATTATTTATAAATAAAACTCACTTAATAATTTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGAc                          >  1:821979‑M1/25‑141 (MQ=255)
                                                                                                                  gagttttatttataaacaataaaaAACCAAGTGCAGAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGAc                          >  2:821979‑M1/25‑141 (MQ=255)
                                                                                                                   tagataagccgttGAGCATTATGAACCAAGTCAGTCCTTCGGCACTTGGTTCACCCCGCTGTATGAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACa                         >  2:906340/12‑141 (MQ=255)
                                                                                                                   tAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGCCa                         >  2:659440/1‑141 (MQ=255)
                                                                                                                     gATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                       <  1:939517/141‑1 (MQ=255)
                                                                                                                     gATAACTACTGTTTCATTATGAACCAAGTGCAACTTTCTGCACTTGGCTGCTTGTTTTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                       <  1:358218/141‑1 (MQ=255)
                                                                                                                      aTAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTa                      >  2:163890/1‑141 (MQ=255)
                                                                                                                       tAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTac                     >  1:480071/1‑141 (MQ=255)
                                                                                                                        aaCTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAACTAAAACTCACTTAATAATGTTTTCCTAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGACAAGACCCATTacc                    >  2:409524/1‑140 (MQ=255)
                                                                                                                           tactTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTa                 <  1:274481/141‑1 (MQ=255)
                                                                                                                             ataaacaataaaaAACCAAGTGCAGAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGt               <  1:917722‑M1/128‑1 (MQ=255)
                                                                                                                              ttGATAATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt              <  2:304511/141‑1 (MQ=255)
                                                                                                                              tggattgttATGAGCCNAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCGCTTACTAATGTCTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt              <  1:861153/134‑1 (MQ=255)
                                                                                                                               tGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTa             <  1:881786/141‑1 (MQ=255)
                                                                                                                                 aTCATTATGGACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTGTAAATAAATCTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTTAAAAGAGACATTACACTAGTTAAt           >  2:430346/1‑141 (MQ=255)
                                                                                                                                 aTCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAATAGACATTACACTAGTTAAt           >  2:934592/1‑141 (MQ=255)
                                                                                                                                 aTCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAt           >  1:907953/1‑141 (MQ=255)
                                                                                                                                  tgatgaTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAGGATATTCGTGAAAAGAGACATTACACTAGTTAAtt          >  2:244806/6‑141 (MQ=255)
                                                                                                                                  tCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAtt          <  1:102326/141‑1 (MQ=255)
                                                                                                                                       aTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAGTGTTTTCATAGGCTTCTTCGACTGCTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTACTTTTCaa     >  2:568/1‑141 (MQ=255)
                                                                                                                                       aTGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCaa     >  2:898446/1‑141 (MQ=255)
                                                                                                                                         gAACCAAGTGCAACTTTCTTCACTTGGTTTTTTATTGTTTATAATTAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAAc   <  1:332188/141‑1 (MQ=255)
                                                                                                                                          AACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACa  >  1:32010‑M1/1‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                            
ATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCAACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACA  >  CP000730/1822579‑1822857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.