| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 811169 = | 49 (0.900) | 5 (0.100) | 4/244 | 3.1 | 9.5% | intergenic (+11/‑122) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein |
| ? | CP000730 | 811239 = | 51 (1.020) | intergenic (+81/‑52) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTACTGCCAATATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/811319‑811169‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtcttttTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG > CP000730/811239‑811378 CTACTGCCAATATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTG < 2:298348/141‑1 CTGCCAATATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAG < 2:118067/141‑1 AATATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTT < 1:390459/141‑1 AATATAAATAGCATTGTACATCTTAGAGCATTGATTTCGTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTT < 1:149803/141‑1 ATATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCTCTATTTCCCTTTACATGTGAAGGTCTTT < 2:374592/141‑1 TATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTT < 2:569052/141‑1 AAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTA > 2:183746/1‑141 GACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGG > 2:215653/1‑141 aaGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTTTTATGTTTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGG > 2:541729/3‑141 GAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGTGGGGC > 2:586206/1‑141 GTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATA < 1:541729/141‑1 AAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTG > 1:122331/1‑141 AGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGT > 2:460007/1‑141 GTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGC < 1:460007/141‑1 TCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCA < 1:6816/141‑1 CTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAA > 1:63285/1‑141 TTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG > 1:402010/1‑141 TTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG > 1:39575/1‑141 TTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG < 1:8439/141‑1 CTACTGCCAATATAAATAGCATTGTACATCTTAGAGCATTGATTTCTTACTCAGACTCATAATGAGTTAGATACACATAAAAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/811319‑811169‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaggtcttttTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG > CP000730/811239‑811378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |