| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 811169 = | 49 (0.900) | 5 (0.100) | 4/244 | 3.1 | 9.5% | intergenic (+11/‑122) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein |
| ? | CP000730 | 811239 = | 51 (1.020) | intergenic (+81/‑52) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATCATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATA > CP000730/811029‑811309 | aaTCATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACaattaaatta < 1:42268/141‑1 (MQ=255) cATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTaaaa < 1:593974/141‑1 (MQ=255) gaATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCtt > 2:323893/1‑141 (MQ=255) ccTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACAt > 1:85718/1‑141 (MQ=255) ccTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACAt > 2:522779/1‑141 (MQ=255) tAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTa < 1:527851/141‑1 (MQ=255) aGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTaa < 1:428080/141‑1 (MQ=255) aacaacTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGaa > 2:615750/1‑141 (MQ=255) aacTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATa > 2:610799/1‑141 (MQ=255) aaaaCCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGAt < 2:486849/141‑1 (MQ=255) tctcAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGtc > 2:521267/1‑141 (MQ=255) gTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACCACAAATAACAATTAAATTAAACGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTa < 1:178394/141‑1 (MQ=255) aGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGt < 2:570100/141‑1 (MQ=255) aGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGAGATTCGTTTCGTCTTGTCTCCTACATGt > 2:422921/1‑141 (MQ=255) tGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGa < 2:273922/141‑1 (MQ=255) aTGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAg > 1:507532/1‑141 (MQ=255) tGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAgg > 1:236452/1‑141 (MQ=255) tGGTTATGTATTAGCATTAAAAGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTACACGACATTCACATGTAAAGGGACATAGCGATTCGTTTCGTCTCGTCTCCTACATGTTGAAgg < 2:161543/141‑1 (MQ=255) ggTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGt > 1:211157/1‑141 (MQ=255) gTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTc < 1:323893/141‑1 (MQ=255) tATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtt > 2:6816/1‑141 (MQ=255) tATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtt < 2:131163/141‑1 (MQ=255) aGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTAtg > 2:1270/1‑141 (MQ=255) aaaCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATc < 1:71263/141‑1 (MQ=255) aaCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCt < 1:513045/141‑1 (MQ=255) aCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTa > 2:67179/1‑141 (MQ=255) tAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACt > 1:451382/1‑141 (MQ=255) aaGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCAt < 2:424152/141‑1 (MQ=255) gCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTa > 1:55532/1‑141 (MQ=255) tACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAg > 1:165909/1‑141 (MQ=255) aCAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGt < 1:309589/141‑1 (MQ=255) cAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTc < 2:350773/141‑1 (MQ=255) gatgaCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTa > 2:291348/1‑141 (MQ=255) tgaCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAg < 1:527647/141‑1 (MQ=255) aCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTc > 2:602792/1‑131 (MQ=255) aCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTc < 1:602792/131‑1 (MQ=255) ttGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATc > 1:271978/1‑141 (MQ=255) gTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCaa < 2:188748/141‑1 (MQ=255) tttGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGAttcgttt < 1:63548/64‑1 (MQ=255) tttGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGAttcgttt > 2:63548/1‑64 (MQ=255) gACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGAGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGctct < 1:422921/141‑1 (MQ=255) caacaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTaa < 2:451382/141‑1 (MQ=255) aacaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATCCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTCTCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAg > 1:422345/1‑141 (MQ=255) acaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGa < 1:283357/141‑1 (MQ=255) cAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAAt > 2:199162/1‑141 (MQ=255) aattaaattaAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATg < 1:291348/141‑1 (MQ=255) ttaaattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt > 1:397244/1‑141 (MQ=255) attaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtt < 1:280890/71‑1 (MQ=255) attaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtt > 2:280890/1‑71 (MQ=255) aaaaGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTtata > 2:569052/1‑141 (MQ=255) | AATCATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATA > CP000730/811029‑811309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |