| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 811169 = | 49 (0.900) | 5 (0.100) | 4/244 | 3.1 | 9.5% | intergenic (+11/‑122) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein |
| ? | CP000730 | 811239 = | 51 (1.020) | intergenic (+81/‑52) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG > CP000730/811104‑811378 | aGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTAtg > 2:1270/1‑141 (MQ=255) aaaCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATc < 1:71263/141‑1 (MQ=255) aaCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCt < 1:513045/141‑1 (MQ=255) aCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTa > 2:67179/1‑141 (MQ=255) tAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACt > 1:451382/1‑141 (MQ=255) aaGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCAt < 2:424152/141‑1 (MQ=255) gCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTa > 1:55532/1‑141 (MQ=255) tACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAg > 1:165909/1‑141 (MQ=255) aCAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGt < 1:309589/141‑1 (MQ=255) cAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTc < 2:350773/141‑1 (MQ=255) gatgaCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTa > 2:291348/1‑141 (MQ=255) tgaCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAg < 1:527647/141‑1 (MQ=255) aCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTc > 2:602792/1‑131 (MQ=255) aCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTc < 1:602792/131‑1 (MQ=255) ttGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATc > 1:271978/1‑141 (MQ=255) gTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCaa < 2:188748/141‑1 (MQ=255) gACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGAGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGctct < 1:422921/141‑1 (MQ=255) caacaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTaa < 2:451382/141‑1 (MQ=255) aacaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATCCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTCTCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAg > 1:422345/1‑141 (MQ=255) acaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGa < 1:283357/141‑1 (MQ=255) cAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAAt > 2:199162/1‑141 (MQ=255) aattaaattaAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATg < 1:291348/141‑1 (MQ=255) ttaaattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt > 1:397244/1‑141 (MQ=255) aaaaGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTtata > 2:569052/1‑141 (MQ=255) aaaGACCTTCACATGTAAAGGGAAATAGAGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTatat > 2:374592/1‑141 (MQ=255) aaGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTACGAAATCAATGCTCTAAGATGTACAATGCTATTTATAtt > 1:149803/1‑141 (MQ=255) aaGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATAtt > 1:390459/1‑141 (MQ=255) cTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCag > 2:118067/1‑141 (MQ=255) cacaTGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCagtag > 2:298348/1‑141 (MQ=255) tGTAAAGGGAAATAGCGATACGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTTTGTGTATCTGAATCATTATGAGTCTGAGTAGGAAATCAATGCTCTTAGAGGTACAAGGGGATTTCTTTTGGCAGTAGTTgg > 2:8439/1‑141 (MQ=255) aaaGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATTTGTTTTTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTACGATGTACAATGCTATTTATATTTGCATTAGTTGGCgg > 2:451602/1‑141 (MQ=255) aaaGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCgg > 2:451469/1‑141 (MQ=255) ggAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGcc < 2:373255/141‑1 (MQ=255) gAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGcac > 1:264629/1‑139 (MQ=255) ttAGCGATTCGTGTCGTCTTGTCTCCTACATGTTGAAGGTCTGTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGAGGTACAATGCTAGTTATAGTGGCAGTAGTTGGCGGGGCCCCaa < 2:422345/140‑1 (MQ=255) tAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAac > 2:432923/1‑141 (MQ=255) tAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAac > 1:239321/1‑141 (MQ=255) gCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAacac > 1:255612/1‑141 (MQ=255) cGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAAcaca < 2:397244/141‑1 (MQ=255) ttcgtttcgtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGaa > 2:595087/1‑141 (MQ=255) ttcgtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAgg > 2:39030/1‑141 (MQ=255) ttcgtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAgg < 1:627313/141‑1 (MQ=255) gtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCgg > 1:108282/1‑141 (MQ=255) tCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGa < 2:507532/141‑1 (MQ=255) gTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTAtt < 2:67777/92‑1 (MQ=255) gTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTAtt > 1:67777/1‑92 (MQ=255) gTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGt > 2:166814/1‑141 (MQ=255) cTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCt < 1:315896/141‑1 (MQ=255) aCATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTaa < 1:531713/141‑1 (MQ=255) cATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAAc < 1:615750/141‑1 (MQ=255) aTGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACa > 2:39811/1‑141 (MQ=255) gtGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAata < 1:541729/140‑1 (MQ=255) aaGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATtg > 1:122331/1‑141 (MQ=255) aGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATtgt > 2:460007/1‑141 (MQ=255) gTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGc < 1:460007/141‑1 (MQ=255) tCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCa < 1:6816/141‑1 (MQ=255) cTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCaa > 1:63285/1‑141 (MQ=255) ttttATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTg > 1:402010/1‑141 (MQ=255) ttttATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTg > 1:39575/1‑141 (MQ=255) ttttATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTg < 1:8439/141‑1 (MQ=255) | AGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAACAATATTGTGCAAGTTG > CP000730/811104‑811378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |