New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 2736813 = | 39 (0.710) | 4 (0.080) | 4/246 | 3.1 | 11.0% | intergenic (+17/‑2697) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter |
? | CP000730 | 2736870 = | 29 (0.580) | intergenic (+74/‑2640) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CCCGGTAAATAACGAGACGTTTGTTAAAGCGAAAATAGACTATAAAGATGTGGCAGAAGAAATTAGAGAAGCTGAATAGTCTAATATAATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2736960‑2736813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaggtcttttAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTC > CP000730/2736870‑2737007 CCCGGTAAATAACGAGACGTTTGTTAAAGCGAAAATAGACTATAAAGATGTGGCAGAAGAAATTAGAGAAGCTGAATAGTCTAATATAATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAG < 1:267410/141‑1 GTAAAGAACGAGACGTTTGTTAAAGCGAAAATAGACTATAAAGATGTGGCAGAAGAAATTAGAGAAGCTGAATAGTCTAATATAATTAAAAGACCTTAGCGGTATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCT < 2:58098/141‑1 GTGGCAGAAGAAATTAGAGAAGCTGAATAGTCTAATATAATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTT > 1:109310/1‑99 GTGGCAGAAGAAATTAGAGAAGCTGAATAGTCTAATATAATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTT < 2:109310/99‑1 AATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGT > 2:211054/1‑141 ATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTT > 1:47273/1‑141 CTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGG > 2:234737/1‑141 TCGTTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTC < 1:234737/141‑1 AGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAACGTTTTTTATCTCAACGAC < 1:316898/141‑1 GTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAA > 2:206502/1‑141 TTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACGTCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTC < 2:216993/141‑1 TTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTC < 1:277507/141‑1 CCCGGTAAATAACGAGACGTTTGTTAAAGCGAAAATAGACTATAAAGATGTGGCAGAAGAAATTAGAGAAGCTGAATAGTCTAATATAATTAAAAGACCTTAGCGATATTAGGAACAGGTGGTTCTAAATGCATCGTTAAGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2736960‑2736813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaggtcttttAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTC > CP000730/2736870‑2737007 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |