New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2736813 =	39 (0.710)	4 (0.080)	4/246	3.1	11.0%	intergenic (+17/‑2697)	panE2/USA300HOU_2595	2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter
	?	CP000730	2736870 =	29 (0.580)					intergenic (+74/‑2640)	panE2/USA300HOU_2595	2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTCATC  >  CP000730/2736737‑2737010                                                                                                                                      |                                                                                                                                             gACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTatat                                                                                                                                       >  1:504506/1‑141 (MQ=255)    acCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAg                                                                                                                                    >  2:255691/1‑141 (MQ=255)      cccATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGAc                                                                                                                                  <  1:215626/141‑1 (MQ=255)         atatCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTAt                                                                                                                               <  1:21853/141‑1 (MQ=255)          tatCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTAtt                                                                                                                              <  2:390233/141‑1 (MQ=255)               tGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGc                                                                                                                          <  2:348055/140‑1 (MQ=255)               tGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGc                                                                                                                          >  1:348055/1‑140 (MQ=255)                    cTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTctct                                                                                                                    <  1:168211/141‑1 (MQ=255)                        ttATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAAtt                                                                                                                <  1:336271/141‑1 (MQ=255)                        ttATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATAAAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAAtt                                                                                                                <  2:136612/141‑1 (MQ=255)                         tataGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAAttt                                                                                                               >  1:430831/1‑141 (MQ=255)                           taGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGAACTTAATGATGCATTTAGAACCACCTTTTCCTAAGATCGCTAAGGCCTTTTAATTATATTAGACTATTCAGCTTCTCTAATttct                                                                                                             >  1:450236/1‑141 (MQ=255)                                 tttACGTGCGTATCAACAAAATATGTAAACACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTACTCTAATTTCTTCTGcc                                                                                                       <  1:371927/141‑1 (MQ=255)                                       tttttttCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCt                                                                                                 >  2:8825/7‑141 (MQ=255)                                       cgcgTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCt                                                                                                 >  2:205076/1‑141 (MQ=255)                                                  aaaaTATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTAt                                                                                      <  1:195900/141‑1 (MQ=255)                                                    aaTATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTAttt                                                                                    <  2:373307/141‑1 (MQ=255)                                                     atatGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTAtttt                                                                                   <  2:504506/141‑1 (MQ=255)                                                                  tatataATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAAc                                                                      >  1:132089/1‑141 (MQ=255)                                                                          ataaAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGtt                                                              <  2:450236/141‑1 (MQ=255)                                                                             aaaaGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCcac                                                                                                     >  2:109310/1‑99 (MQ=255)                                                                             aaaaGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCcac                                                                                                     <  1:109310/99‑1 (MQ=255)                                                                                aGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATACCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTCTTTAc                                                        >  2:58098/1‑141 (MQ=255)                                                                                    cTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCggg                                                    >  1:267410/1‑141 (MQ=255)                                                                                                     aaCCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGt                                   <  2:490827/141‑1 (MQ=255)                                                                                                            tGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAg                            >  2:636655/1‑141 (MQ=255)                                                                                                                 cTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTg                       <  1:535709/141‑1 (MQ=255)                                                                                                                 cTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTg                       >  2:105155/1‑141 (MQ=255)                                                                                                                   aaTATCGCTAAGGTCTTCTAATTATATTAGACTATTCAGCTTCTCTAGTTTCTTCTGCTACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGACTGtatatcagcttcgca                     >  2:418264/1‑127 (MQ=255)                                                                                                                       tcgttAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTAtctc                 <  1:234737/137‑1 (MQ=255)                                                                                                                             aGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAACGTTTTTTATCTCAACGAc           <  1:316898/141‑1 (MQ=255)                                                                                                                               gTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACaa         >  2:206502/1‑141 (MQ=255)                                                                                                                                   tttAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACGTCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTc     <  2:216993/141‑1 (MQ=255)                                                                                                                                   tttAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTc     <  1:277507/141‑1 (MQ=255)                                                                                                                                      aaTTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTCATc  <  1:577993/141‑1 (MQ=255)                                                                                                                                      |                                                                                                                                             GACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTTATTTACCGGGAAATGTTGTTGGAATGTTTCAAAGTTTTGTATCTCAACGACAACGTCATC  >  CP000730/2736737‑2737010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.