New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2736813 =	39 (0.710)	4 (0.080)	4/246	3.1	11.0%	intergenic (+17/‑2697)	panE2/USA300HOU_2595	2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter
	?	CP000730	2736870 =	29 (0.580)					intergenic (+74/‑2640)	panE2/USA300HOU_2595	2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCTCTTGAAGTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTT  >  CP000730/2736676‑2736950                                                                                                                                          |                                                                                                                                          aCCTCTTGAAGTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATaaaaa                                                                                                                                        >  2:21853/1‑141 (MQ=255)      ttGAAGTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCt                                                                                                                                   >  2:336271/1‑141 (MQ=255)       tGAAGTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCtt                                                                                                                                  >  2:195900/1‑141 (MQ=255)        gAAGTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTa                                                                                                                                 >  1:627178/1‑141 (MQ=255)           gTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATCAATATTAGAAAAAGACCTTAACg                                                                                                                              >  1:490827/1‑141 (MQ=255)               aaGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGc                                                                                                                          <  1:308242/141‑1 (MQ=255)                         aGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAacc                                                                                                                <  1:598757/141‑1 (MQ=255)                          ggCTTTATTTATCGACGTGCACGTGAACACAATCTTGACATCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAATAATGCATTTAGaataa                                                                                                               >  2:371927/1‑138 (MQ=255)                          ggCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAacca                                                                                                               <  1:402848/141‑1 (MQ=255)                          ggCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACAATGCATTTAGAacca                                                                                                               <  1:402847/141‑1 (MQ=255)                                 tttatCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATACGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTc                                                                                                        >  2:387570/1‑141 (MQ=255)                                             cACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTa                                                                                            >  1:216993/1‑141 (MQ=255)                                             cACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTa                                                                                            >  2:277507/1‑141 (MQ=255)                                                    acacAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCtt                                                                                     <  1:450278/141‑1 (MQ=255)                                                     cacaATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCttt                                                                                    <  1:592078/141‑1 (MQ=255)                                                              gACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTatat                                                                           >  1:504506/1‑141 (MQ=255)                                                               acacCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCAtt                                                                                                                       <  1:101479/96‑1 (MQ=255)                                                               acacCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCAtt                                                                                                                       >  2:101479/1‑96 (MQ=255)                                                                 acCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAg                                                                        >  2:255691/1‑141 (MQ=255)                                                                   cccATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGAc                                                                      <  1:215626/141‑1 (MQ=255)                                                                      atatCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTAt                                                                   <  1:21853/141‑1 (MQ=255)                                                                       tatCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTAtt                                                                  <  2:390233/141‑1 (MQ=255)                                                                            tGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCttt                                                                                    >  2:137789/1‑118 (MQ=255)                                                                            tGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCttt                                                                                    <  1:137789/118‑1 (MQ=255)                                                                            tGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGc                                                              >  1:348055/1‑140 (MQ=255)                                                                            tGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGc                                                              <  2:348055/140‑1 (MQ=255)                                                                                 cTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTctct                                                        <  1:168211/141‑1 (MQ=255)                                                                                     ttATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAAtt                                                    <  1:336271/141‑1 (MQ=255)                                                                                     ttATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATAAAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAAtt                                                    <  2:136612/141‑1 (MQ=255)                                                                                      tataGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAAttt                                                   >  1:430831/1‑141 (MQ=255)                                                                                        taGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGAACTTAATGATGCATTTAGAACCACCTTTTCCTAAGATCGCTAAGGCCTTTTAATTATATTAGACTATTCAGCTTCTCTAATttct                                                 >  1:450236/1‑141 (MQ=255)                                                                                              tttACGTGCGTATCAACAAAATATGTAAACACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTACTCTAATTTCTTCTGcc                                           <  1:371927/141‑1 (MQ=255)                                                                                                    tttttttCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCt                                     >  2:8825/7‑141 (MQ=255)                                                                                                    cgcgTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCt                                     >  2:205076/1‑141 (MQ=255)                                                                                                               aaaaTATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTAt                          <  1:195900/141‑1 (MQ=255)                                                                                                                 aaTATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTAttt                        <  2:373307/141‑1 (MQ=255)                                                                                                                  atatGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTAtttt                       <  2:504506/141‑1 (MQ=255)                                                                                                                               tatataATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAAc          >  1:132089/1‑141 (MQ=255)                                                                                                                                       ataaAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGtt  <  2:450236/141‑1 (MQ=255)                                                                                                                                          aaaaGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCcac                                         <  1:109310/99‑1 (MQ=255)                                                                                                                                          aaaaGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCcac                                         >  2:109310/1‑99 (MQ=255)                                                                                                                                          |                                                                                                                                          ACCTCTTGAAGTCGAAGCGATTCAAGGCTTTATTTATCGACGTGCACGTGAACACAATCTTGACACCCCATATCTTGATACTATTTATAGCTTTTTACGCGCGTATCAACAAAATATGTAAGCACATATATAATATAAAAAGACCTTAACGATGCATTTAGAACCACCTGTTCCTAATATCGCTAAGGTCTTTTAATTATATTAGACTATTCAGCTTCTCTAATTTCTTCTGCCACATCTTTATAGTCTATTTTCGCTTTAACAAACGTCTCGTT  >  CP000730/2736676‑2736950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.