New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1236098 =	70 (1.010)	3 (0.050)	3/282	2.2	4.9%	coding (254/642 nt)	yloS	thiamine diphosphokinase
	?	CP000730	1236143 =	50 (0.770)					coding (299/642 nt)	yloS	thiamine diphosphokinase
Rejected: Frequency below/above cutoff threshold.

CAATAATTCAATTTTATTTTGTTGATCGATAACTTCTATATGAACATCATGTTTATAATATGCTTTTTTCAATAATAACTGAATTGCCCCAAAAAAGTGATCTAATCGTCCGCCTGTTGCACCATAAATTGTAATACTATCAAATCCAAGTGCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1236255‑1236098 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcaacagGCGGACGATTAGATCACTTTTTTGGGGCAATTCAGTTATTATTGAAAAAAGCATATTATAAACATGATGTTCATATAGAAGTTATCGATCAACAAAATAAAATTGAATTATTGCCTAAAGGTCAACATACAGTTGAAAAAGATAAG  >  CP000730/1236143‑1236288                                                                                                                                                                                                                                                                                                                  CAATAATTCAATTTTATTTTGTTGATCGATAACTTCTATATGAACATCATGTTTATAATATGCTTTTTTTTTTTATTACTGAATTGCCCCAAAAAAGTGATCTAATCGTCCGCCTGTTGCACCATAAATTGTAATACTATCAAATCCAAGT                                                                                                                                                           >  2:58427/1‑151       TTCAATTTTATTTTGTTGATCGATAACTTCTATATGAACATCATGTTTATAATATGCTTTTTTCAATAATAACTGAATTGCCCCAAAAAAGTGATCTAATCGTCCGCCTGTTGCACCATAAATTGTAATACTATCAAATCCAAGTGCAACA                                                                                                                                                     <  2:653537/151‑1                                                                                                           CGTCCGCCTGTTGCACCATAAATTGTAATACTATCAAATCCAAGTGCAACAGGCGGACGATTAGATCACTTTTTTGGGGCAATTCAGTTATTATTGAAAAAAGCATATTATAAACATGATGTTCATATAGAAGTTATCGATCAACAAAATA                                                 >  2:434594/1‑151                                                                                                                GCCTGTTGCACCATAAATTGTAATACTATCAAATCCAAGTGCAACAGGCGGACGATTAGATCACTTTTTTGGGGCAATTCAGTTATTATTGAAAAAAGCATATTATAAACATGATGTTCATATAGAAGTTATCGATCAACAAAATAAAATT                                            >  1:788395/1‑151                                                                                                                                               AATCCAAGTGCAACAGGCGGACGATTAGATCACTTTTTTGGGGCAATTCAGTTATTATTGAAAAAAGCATATTATAAACATGATGTTCATATAGAAGTTATCGATCAACAAAATAAAATTGAATTATTGCCTAAAGGTCAACATACAGTTG             <  1:434594/151‑1                                                                                                                                                          AACAGGCGGACGATTAGATCACTTTTTTGGGGCAATTCAGTTATTATTGAAAAAAGCATATTATAAACATGATGTTCATATAGAAGTTATCGATCAACAAAATAAAATTGAATTATTGCCTAAAGGTCAACATACAGTTGAAAAAGATAAG  <  1:21767/151‑1                                                                                                                                                                                                                                                                                                                  CAATAATTCAATTTTATTTTGTTGATCGATAACTTCTATATGAACATCATGTTTATAATATGCTTTTTTCAATAATAACTGAATTGCCCCAAAAAAGTGATCTAATCGTCCGCCTGTTGCACCATAAATTGTAATACTATCAAATCCAAGTGCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1236255‑1236098 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcaacagGCGGACGATTAGATCACTTTTTTGGGGCAATTCAGTTATTATTGAAAAAAGCATATTATAAACATGATGTTCATATAGAAGTTATCGATCAACAAAATAAAATTGAATTATTGCCTAAAGGTCAACATACAGTTGAAAAAGATAAG  >  CP000730/1236143‑1236288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.