New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1441573 =	50 (0.720)	4 (0.060)	3/282	2.2	8.0%	coding (598/624 nt)	xpaC	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC
	?	CP000730	1441605 =	45 (0.690)					intergenic (+6/‑26)	xpaC/telA	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC/tellurite resistance protein
Rejected: Frequency below/above cutoff threshold.

GTTGCTATTTTACATCAATCTTGATGATGTTTTTGATGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1441613‑1441573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgtaaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTAGACA  >  CP000730/1441605‑1441754                                                                                                                                                                                                 GTTGCTATTTTACATCAATCTTGATGATGTTTTTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAA                                          >  2:701807/1‑151  TTGCTATTTTACATCAATCTTGATGATGTTTTTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAA                                         >  2:1054763/1‑151  TTGCTATTTTACATCAATCTTGATGATGTTTTTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAA                                         >  2:492269/1‑151         TTTACATCAATCTTGATGATGTTTTTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAA                                  >  1:7179/1‑151                                       TAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTAGA    >  2:886811/1‑151                                         AAATAGCAACTATTGGAGAGATGATTGAGGACTGAAAATAAAAGGTTCAAAGAAAGCCATGCACTAGATGAGTTGATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTCAACAACAAAAACAGGTAGACA  >  2:1058628/1‑151                                                                                                                                                                                                 GTTGCTATTTTACATCAATCTTGATGATGTTTTTGATGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1441613‑1441573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgtaaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTAGACA  >  CP000730/1441605‑1441754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.