| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1441573 = | 50 (0.720) | 4 (0.060) | 3/282 | 2.2 | 8.0% | coding (598/624 nt) | xpaC | 5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC |
| ? | CP000730 | 1441605 = | 45 (0.690) | intergenic (+6/‑26) | xpaC/telA | 5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC/tellurite resistance protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTAGACA > CP000730/1441455‑1441754 | ttttctttttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTaaa > 1:7179‑M1/119‑151 (MQ=255) gTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATa < 1:302012/151‑1 (MQ=255) tttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCaa > 2:492269‑M1/112‑151 (MQ=255) tttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCaa > 2:1054763‑M1/112‑151 (MQ=255) ttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAAc > 2:701807‑M1/111‑151 (MQ=255) acaaacaCGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACt > 2:25024/1‑151 (MQ=255) acaaacaCGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACt > 1:604122/1‑151 (MQ=255) caagAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTgg > 1:652380/4‑151 (MQ=255) cTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTGAAAGATAAAGATGATTAACTTGTATAGATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGAGTGATGGAATAAAGCAACGAATGGAGAgatgat > 2:898681/1‑151 (MQ=255) cTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAgatgat > 2:949377/1‑151 (MQ=255) gATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATtgatg > 1:668380/1‑151 (MQ=255) tGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGAc > 1:917605/1‑151 (MQ=255) aGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTg < 1:533797/151‑1 (MQ=255) aaaCGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAAt > 1:1016228/1‑151 (MQ=255) cGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATaaa > 1:364196/1‑151 (MQ=255) aaCATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAg > 1:527255/1‑151 (MQ=255) cATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGtt > 2:550609/1‑151 (MQ=255) cATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGGTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGtt > 2:370683/1‑151 (MQ=255) aaTCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaa > 2:693964/1‑151 (MQ=255) cGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaaga > 2:39664/1‑151 (MQ=255) gCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaa > 2:478059/1‑151 (MQ=255) cTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGATTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaa > 1:561731/1‑151 (MQ=255) tGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaag < 2:20982/151‑1 (MQ=255) tGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaag < 1:767451/151‑1 (MQ=255) tGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaag < 1:641218/151‑1 (MQ=255) ttAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCAt < 2:793154/151‑1 (MQ=255) tAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATc > 1:417662/1‑151 (MQ=255) aaGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCa > 2:813187/1‑151 (MQ=255) cGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTa > 2:1050907/1‑151 (MQ=255) cGTCTCAACGAAGATGATTATGAACGTTTAGATACTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTa < 1:983375/151‑1 (MQ=255) gTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAg < 2:437450/151‑1 (MQ=255) ctcAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAgat < 1:647915/151‑1 (MQ=255) tgatTATGAACGTTTAGATATTGAAATGGAAATACAACAAAAACATCAAATACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAACGAAAGCCATCCACTAGATGATTTTATAAg > 2:317598/1‑151 (MQ=255) atTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCg > 2:1034048/1‑151 (MQ=255) aaCGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAg < 1:892742/151‑1 (MQ=255) aCGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGa > 1:939209/1‑151 (MQ=255) cGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGaa < 2:394560/151‑1 (MQ=255) aGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATc < 2:634534/151‑1 (MQ=255) tatTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGaa > 1:304996/1‑151 (MQ=255) aaTTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTc > 1:732442/1‑151 (MQ=255) gttgctattttacatcaatcttgatgatgtttttgatgtaaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCaa > 2:701807‑M2/42‑151 (MQ=255) ttgctattttacatcaatcttgatgatgtttttgatgtaaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCaaa > 2:1054763‑M2/41‑151 (MQ=255) ttgctattttacatcaatcttgatgatgtttttgatgtaaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCaaa > 2:492269‑M2/41‑151 (MQ=255) aaaTAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCaaaa > 2:546719/1‑151 (MQ=255) aTAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAaaaag < 1:7951/151‑1 (MQ=255) tttacatcaatcttgatgatgtttttgatgtaaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAaaaagaaaa > 1:7179‑M2/34‑151 (MQ=255) gTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGTGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAaaaagaaaa > 1:273174/1‑151 (MQ=255) aaCATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTg > 2:934273/1‑151 (MQ=255) aCATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGa > 2:175253/1‑151 (MQ=255) catcatCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGaa < 2:417662/151‑1 (MQ=255) atcatcAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGaac < 1:577038/151‑1 (MQ=255) atcaAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGaacaac < 2:652380/151‑1 (MQ=255) aGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACaaaa < 1:658492/151‑1 (MQ=255) taaAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTAGa > 2:886811‑M2/4‑151 (MQ=255) aAATAGCAACTATTGGAGAGATGATTGAGGACTGAAAATAAAAGGTTCAAAGAAAGCCATGCACTAGATGAGTTGATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTCAACAACAAAAACAGGTAGaca > 2:1058628‑M2/2‑151 (MQ=255) | AAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAAGTTAACAATTGAACAACAAAAACAGGTAGACA > CP000730/1441455‑1441754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |