New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1441573 =	50 (0.720)	4 (0.060)	3/282	2.2	8.0%	coding (598/624 nt)	xpaC	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC
	?	CP000730	1441605 =	45 (0.690)					intergenic (+6/‑26)	xpaC/telA	5‑bromo‑4‑chloroindolyl phosphate hydrolysis protein XpaC/tellurite resistance protein
Rejected: Frequency below/above cutoff threshold.

AAAATGCCCAAAAAATCAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAA  >  CP000730/1441423‑1441722                                                                                                                                                       |                                                                                                                                                      tgtctacctgtttttgttgttgaattgttaacttttctttttgaatagtagtattcgataattctttatcgcttatcaactcatctagtgcatggctttctttgaaccttttattttcagtcctcaatcatctctccaatagttgctattt                                                                                                                                                       >  2:1058628‑M1/151‑151 (MQ=255)   tctacctgtttttgttgttcaattgttaacttttctttttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTa                                                                                                                                                     >  2:886811‑M1/149‑151 (MQ=255)    aTGCCCAAAAAATCAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTAc                                                                                                                                                    <  2:141588/151‑1 (MQ=255)        ccAAAAAATCAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCa                                                                                                                                                >  2:440801/1‑151 (MQ=255)           aaaaaTCAATTAATGAACAGCAAAAGTTAGAACAAATACGAATTATTTTGGATGAGGTCAAATGAACACTAATCGCTGATTTAAAGCGGCTAAACGAAGATGATTATGAACGGTTAGATATTGAAATGGAATTAAATAAGTTACATCaaaa                                                                                                                                             <  1:400646/151‑1 (MQ=255)           aaaaaTCAATGAATGAACAGCAAAAGTTAGAACAAACACGAATTAAGTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCaaaa                                                                                                                                             <  1:774006/151‑1 (MQ=255)              aaTCAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTATATATTGAAATGGAATTAAATAAGTGACATCAAAAAca                                                                                                                                          >  2:127380/1‑151 (MQ=255)              aaTCAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAAca                                                                                                                                          <  1:695625/151‑1 (MQ=255)                 cAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAAcatca                                                                                                                                       >  1:414305/1‑151 (MQ=255)                  aaTTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAAcatcat                                                                                                                                      >  2:561491/1‑151 (MQ=255)                         aaaCAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACTAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGAtt                                                                                                                               <  2:204996/150‑1 (MQ=255)                           aCAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGa                                                                                                                             >  1:66381/1‑151 (MQ=255)                             aGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATg                                                                                                                           >  2:577038/1‑151 (MQ=255)                                 ttttctttttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTaaa                                                                                                                       >  1:7179‑M1/119‑151 (MQ=255)                                    gTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATa                                                                                                                    <  1:302012/151‑1 (MQ=255)                                        tttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCaa                                                                                                                >  2:492269‑M1/112‑151 (MQ=255)                                        tttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCaa                                                                                                                >  2:1054763‑M1/112‑151 (MQ=255)                                         ttgaatagtagtattcgataattctttatcgcttataaaatcatctagtggatggctttctttgaaacttttattttcagtcatcaatcatctctccaatagttgctattTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAAc                                                                                                               >  2:701807‑M1/111‑151 (MQ=255)                                          acaaacaCGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACt                                                                                                              >  2:25024/1‑151 (MQ=255)                                          acaaacaCGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACt                                                                                                              >  1:604122/1‑151 (MQ=255)                                               caagAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTgg                                                                                                         >  1:652380/4‑151 (MQ=255)                                                        cTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTGAAAGATAAAGATGATTAACTTGTATAGATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGAGTGATGGAATAAAGCAACGAATGGAGAgatgat                                                                                                >  2:898681/1‑151 (MQ=255)                                                        cTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAgatgat                                                                                                >  2:949377/1‑151 (MQ=255)                                                             gATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATtgatg                                                                                           >  1:668380/1‑151 (MQ=255)                                                               tGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGAc                                                                                         >  1:917605/1‑151 (MQ=255)                                                                 aGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTg                                                                                       <  1:533797/151‑1 (MQ=255)                                                                      aaaCGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAAt                                                                                  >  1:1016228/1‑151 (MQ=255)                                                                         cGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATaaa                                                                               >  1:364196/1‑151 (MQ=255)                                                                           aaCATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAg                                                                             >  1:527255/1‑151 (MQ=255)                                                                             cATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGtt                                                                           >  2:550609/1‑151 (MQ=255)                                                                             cATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGGTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGtt                                                                           >  2:370683/1‑151 (MQ=255)                                                                                 aaTCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaa                                                                       >  2:693964/1‑151 (MQ=255)                                                                                    cGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaaga                                                                    >  2:39664/1‑151 (MQ=255)                                                                                     gCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaa                                                                   >  2:478059/1‑151 (MQ=255)                                                                                      cTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGATTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaa                                                                  >  1:561731/1‑151 (MQ=255)                                                                                       tGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaag                                                                 <  1:641218/151‑1 (MQ=255)                                                                                       tGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaag                                                                 <  1:767451/151‑1 (MQ=255)                                                                                       tGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCaaagaaag                                                                 <  2:20982/151‑1 (MQ=255)                                                                                           ttAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCAt                                                             <  2:793154/151‑1 (MQ=255)                                                                                            tAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATc                                                            >  1:417662/1‑151 (MQ=255)                                                                                              aaGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCa                                                          >  2:813187/1‑151 (MQ=255)                                                                                                 cGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTa                                                       >  2:1050907/1‑151 (MQ=255)                                                                                                 cGTCTCAACGAAGATGATTATGAACGTTTAGATACTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTa                                                       <  1:983375/151‑1 (MQ=255)                                                                                                  gTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAg                                                      <  2:437450/151‑1 (MQ=255)                                                                                                    ctcAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAgat                                                    <  1:647915/151‑1 (MQ=255)                                                                                                               tgatTATGAACGTTTAGATATTGAAATGGAAATACAACAAAAACATCAAATACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAACGAAAGCCATCCACTAGATGATTTTATAAg                                         >  2:317598/1‑151 (MQ=255)                                                                                                                 atTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCg                                       >  2:1034048/1‑151 (MQ=255)                                                                                                                       aaCGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAg                                 <  1:892742/151‑1 (MQ=255)                                                                                                                        aCGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGa                                >  1:939209/1‑151 (MQ=255)                                                                                                                         cGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGaa                               <  2:394560/151‑1 (MQ=255)                                                                                                                              aGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATc                          <  2:634534/151‑1 (MQ=255)                                                                                                                                 tatTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGaa                       >  1:304996/1‑151 (MQ=255)                                                                                                                                            aaTTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTc            >  1:732442/1‑151 (MQ=255)                                                                                                                                                aaaTAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCaaaa        >  2:546719/1‑151 (MQ=255)                                                                                                                                                  aTAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAaaaag      <  1:7951/151‑1 (MQ=255)                                                                                                                                                      gTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGTGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAaaaagaaaa  >  1:273174/1‑151 (MQ=255)                                                                                                                                                       |                                                                                                                                                      AAAATGCCCAAAAAATCAATTAATGAACAGCAAAAGTTAGAACAAACACGAATTACTTTGGATGAGGTCAAACGAACATTAATCGCTGATTTAAAGCGTCTCAACGAAGATGATTATGAACGTTTAGATATTGAAATGGAATTAAATAAGTTACATCAAAAACATCATCAAGATTGATGTAAAATAGCAACTATTGGAGAGATGATTGATGACTGAAAATAAAAGTTTCAAAGAAAGCCATCCACTAGATGATTTTATAAGCGATAAAGAATTATCGAATACTACTATTCAAAAAGAAAA  >  CP000730/1441423‑1441722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.