New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2537754 =	10 (0.340)	3 (0.110)	3/276	1.3	20.5%	intergenic (+108/+46)	USA300HOU_2397/gpmA2	hypothetical protein/phosphoglycerate mutase
	?	CP000730	2537797 =	14 (0.510)					intergenic (+151/+3)	USA300HOU_2397/gpmA2	hypothetical protein/phosphoglycerate mutase

CTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2537809‑2537754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAATTTCCGTGT  >  CP000730/2537797‑2537944                                                                                                                                                                                                              CTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTT                                                       >  2:54834/1‑151       ATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTTTTTTTAGAAGTAGTATTGATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCAGCTt                                                 >  2:323404/1‑150                  GCTGCATGTACACAAGGAGTTAGGGTATATGCAGCTCTTTTTTTATGAGTAGTTTTTGTCTATAACTTCTAAATCATCCGTTAATTCGTAAACAAGCGCGGCACCTGTTTTAATTTCATAATTAATGATATGTTCATCTGCCACATCTTCA                                      >  2:341248/1‑151                                                 CAGCTCTTTTTTTTTTTTTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAATTTC       >  2:456696/1‑151                                                      CTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTCAATTTCCGTGT  >  2:308537/1‑151                                                                                                                                                                                                              CTACTTATAAAAAAAGAGCTGCATGTACACAAGGAGTGAGTGTATATGCAGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2537809‑2537754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAATTTCCGTGT  >  CP000730/2537797‑2537944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.