New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2537754 =	10 (0.340)	3 (0.110)	3/276	1.3	20.5%	intergenic (+108/+46)	USA300HOU_2397/gpmA2	hypothetical protein/phosphoglycerate mutase
	?	CP000730	2537797 =	14 (0.510)					intergenic (+151/+3)	USA300HOU_2397/gpmA2	hypothetical protein/phosphoglycerate mutase

GTGCTTTAAAGATTATTAAGCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATA  >  CP000730/2537606‑2537887                                                                                                                                                     |                                                                                                                                      acacggaaattgaattcgcgcattgattaaatatcttgaagatgtgtcagatgaagatatcattaattatgaaattaaaacaggtgcaccgcttgtttatgaattaacggatgatttagaagttatagataaatactacttataaaaaAag                                                                                                                                     >  2:308537‑M1/149‑151 (MQ=255)      gaaattcaattcgcgcattgattaaatatcttgaagatgtgtcagatgaagatatcattaattatgaaattaaaacaggtgcaccgcttgtttatgaattaacggatgatttagaagttatagataaatactaaaaaaaaaaaAAGAGCTg                                                                                                                                >  2:456696‑M1/144‑151 (MQ=255)                           aaaaGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTtgtg                                                                                                           <  1:298155/151‑1 (MQ=255)                           aaaaGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTACGAGTATCCATAGCTAGTTAATATAAAATCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTtgtg                                                                                                           <  1:375150/151‑1 (MQ=255)                                     tgaagatgtggcagatgaacatatcattaattatgaaattaaaacaggtgccgcgcttgtttacgaattaacggatgatttagaagttatagacaaaaactactcataaaaaAAGAGCTGCATATACCCTAACTCCTTGTGTACATGCAGc                                                                                                 >  2:341248‑M1/113‑151 (MQ=255)                                                aagctgaagatatcattaattatgaaattaaaacaggtgcaccgcttgtttatgaattaacggatgatttagaagttatagatcaatactacttctaaaaaAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTtat                                                                                      >  2:323404‑M1/102‑151 (MQ=255)                                                    ttGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagt                                                                                  <  2:409061/151‑1 (MQ=255)                                                      aagatatcattaattatgaaattaaaacaggtgcaccgcttgtttatgaattaacggatgatttagaagttatagataaatactacttataaaaaAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagtag                                                                                >  2:54834‑M1/96‑151 (MQ=255)                                                              tGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACCTGCAGCTCTTTTTTTATAAGTCGTATTTATc                                                                        <  2:178511/151‑1 (MQ=255)                                                                            tatTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAat                                                          >  2:317028/1‑151 (MQ=255)                                                                                           cTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCAt                                           >  2:113900/1‑151 (MQ=255)                                                                                                                          tATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAta            <  2:449186/151‑1 (MQ=255)                                                                                                                          tATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAta            >  1:63563/1‑151 (MQ=255)                                                                                                                                   aCATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGat   <  1:411524/151‑1 (MQ=255)                                                                                                                                    cATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata  >  2:254796/1‑151 (MQ=255)                                                                                                                                                     |                                                                                                                                      GTGCTTTAAAGATTATTAAGCAACATAAAAGAGCGAAATAATTGTTTTAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATA  >  CP000730/2537606‑2537887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.