New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2537754 =	10 (0.340)	3 (0.110)	3/276	1.3	20.5%	intergenic (+108/+46)	USA300HOU_2397/gpmA2	hypothetical protein/phosphoglycerate mutase
	?	CP000730	2537797 =	14 (0.510)					intergenic (+151/+3)	USA300HOU_2397/gpmA2	hypothetical protein/phosphoglycerate mutase

TAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAATTTCCGTGT  >  CP000730/2537653‑2537944                                                                                                                                                 |                                                                                                                                                    aagctgaagatatcattaattatgaaattaaaacaggtgcaccgcttgtttatgaattaacggatgatttagaagttatagatcaatactacttctaaaaaAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTtat                                                                                                                                               >  2:323404‑M1/102‑151 (MQ=255)     ttGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagt                                                                                                                                           <  2:409061/151‑1 (MQ=255)       aagatatcattaattatgaaattaaaacaggtgcaccgcttgtttatgaattaacggatgatttagaagttatagataaatactacttataaaaaAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAagtag                                                                                                                                         >  2:54834‑M1/96‑151 (MQ=255)               tGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACCTGCAGCTCTTTTTTTATAAGTCGTATTTATc                                                                                                                                 <  2:178511/151‑1 (MQ=255)                             tatTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAat                                                                                                                   >  2:317028/1‑151 (MQ=255)                                            cTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCAt                                                                                                    >  2:113900/1‑151 (MQ=255)                                                                           tATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAta                                                                     >  1:63563/1‑151 (MQ=255)                                                                           tATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCAta                                                                     <  2:449186/151‑1 (MQ=255)                                                                                    aCATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGat                                                            <  1:411524/151‑1 (MQ=255)                                                                                     cATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGata                                                           >  2:254796/1‑151 (MQ=255)                                                                                         ctacttataaaaaaagagctgcatgtacacaaggagtgagtgtatatgcagctcttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCtt                                                       >  2:54834‑M2/57‑151 (MQ=255)                                                                                               ataaaaaaagagctgcatgtacacaaggagtgagtgtatatgcagctcttTTTTTAGAAGTAGTATTGATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCAGctt                                                 >  2:323404‑M2/51‑150 (MQ=255)                                                                                                          gctgcatgtacacaaggagttagggtatatgcagctcttTTTTTATGAGTAGTTTTTGTCTATAACTTCTAAATCATCCGTTAATTCGTAAACAAGCGCGGCACCTGTTTTAATTTCATAATTAATGATATGTTCATCTGCCACATCTTCa                                      >  2:341248‑M2/40‑151 (MQ=255)                                                                                                          gCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTTTTTTTTGTATTTATCTATTACTTCTAAATCATCCGTTACTTCTTATCCAAGCGGTACACTTTTTTTGATTACATAAGTAATGATATCTTCTTCTGTCACTTCTTCa                                      >  2:426991/1‑151 (MQ=255)                                                                                                                    cactcactCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTaa                            >  2:179419/1‑151 (MQ=255)                                                                                                                      ctcactcCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATc                          <  1:317028/151‑1 (MQ=255)                                                                                                                      ctcactcCTTGTCTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATc                          <  2:368048/151‑1 (MQ=255)                                                                                                                                   tACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCgaattg             >  2:312613/1‑151 (MQ=255)                                                                                                                                     cATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCgaattgaa           >  1:368865/1‑151 (MQ=255)                                                                                                                                         cagctcttTTTTTTTTTTTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAATTTc       >  2:456696‑M2/9‑151 (MQ=255)                                                                                                                                              cttTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTCAATTTCCgtgt  >  2:308537‑M2/4‑151 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TAATTTGACTATATTGTATGTCTAACTATATTTTCGAGTATCCCTAGCTCGTTAATATAAACTCTATACTTAACTATTTCCTTACATTACTTCACATATTTAAGAGCTGCATATACACTCACTCCTTGTGTACATGCAGCTCTTTTTTTATAAGTAGTATTTATCTATAACTTCTAAATCATCCGTTAATTCATAAACAAGCGGTGCACCTGTTTTAATTTCATAATTAATGATATCTTCATCTGACACATCTTCAAGATATTTAATCAATGCGCGAATTGAATTTCCGTGT  >  CP000730/2537653‑2537944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.