| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2738713 | 44 (1.490) | 3 (0.110) | 3/280 | 1.3 | 7.2% | intergenic (+1917/‑797) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | = 2738751 | 36 (1.300) | intergenic (+1955/‑759) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCACCTGGCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2738558‑2738713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgcaatgGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAGTAAAAGCAGATGTTCAAGATTTAAACCATGGTACAGTCCACAGTCCTTCACCAGTTGATGTGAAAGCAGGTGAATACGAAGACTGTAAAGATGC < CP000730/2738751‑2738603 TCACCTGGCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTG < 1:450892/151‑1 caaCTGGCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCATCTGCTTTCACATCAACTAGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGC < 2:256432/148‑1 CCTGGCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAA > 2:428017/1‑151 CCTGGCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAA > 1:30487/1‑151 TTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAA < 2:188921/151‑1 GTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAG < 1:295101/113‑1 GTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAG > 2:295101/1‑113 GCAATGGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAGTAAAAGCAGATGTTCAAGATTTAAACCATGGTACAGTCCACAGTCCTTCACCAGTTGATGTGAAAGCAGGTGAATACGAAGACTGTAAAG > 1:97460/1‑151 CAATGGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAGTAAAAGCAGATGTTCAAGATTTAAACCATGGTACAGTCCACAGTCCTTCACCAGTTGATGTGAAAGCAGGTGAATACGAAGACTGTAAAGA > 1:91653/1‑151 TGGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAGTAAAAGCAGATGTTCAAGATTTAAACCATGGTACAGTCCACAGTCCTTCACCAGTTGATGTGAAAGCAGGTGAATACGAAGACTGTAAAGATGC > 2:127955/1‑151 TCACCTGGCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2738558‑2738713‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgcaatgGTTACGCAAGGTGTTGCTGATGAATTTGTAATTATTGACATTGCAAAAGACAAAGTAAAAGCAGATGTTCAAGATTTAAACCATGGTACAGTCCACAGTCCTTCACCAGTTGATGTGAAAGCAGGTGAATACGAAGACTGTAAAGATGC < CP000730/2738751‑2738603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |