New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2738713	44 (1.490)	3 (0.110)	3/280	1.3	7.2%	intergenic (+1917/‑797)	panE2/USA300HOU_2595	2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter
	?	CP000730	= 2738751	36 (1.300)					intergenic (+1955/‑759)	panE2/USA300HOU_2595	2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter
Rejected: Frequency below/above cutoff threshold.

GCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTACACGTAAAAATATCTATACTGAAATTAAAGA  >  CP000730/2738603‑2738898                                                                                                                                                     |                                                                                                                                                    gCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACca                                                                                                                                                   >  2:127955‑M2/1‑149 (MQ=255)    tCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattg                                                                                                                                                >  1:91653‑M2/1‑146 (MQ=255)     cTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgc                                                                                                                                               >  1:97460‑M2/1‑145 (MQ=255)          cAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGGAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACCTCTGCGTTGACTTTGTCTTTTGCAATGTCAATGATTACAACTTCTTCAGCAGCGCGCTGCGTAAGCATCGCAAAgg                                                                                                                                          <  2:376509/151‑1 (MQ=255)           aGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGc                                                                                                                                         <  1:107686/151‑1 (MQ=255)                  gTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCtt                                                                                                                                  <  1:202187/151‑1 (MQ=255)                       cACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATcc                                                                                                                             <  2:363858/151‑1 (MQ=255)                            gCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAg                                                                                                                        <  2:127087/151‑1 (MQ=255)                                   caTCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCAtc                                                                                                                 >  2:17526/1‑151 (MQ=255)                                       aaCTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCg                                                                                                             >  2:254914/1‑151 (MQ=255)                                         cTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGAt                                                                                                           <  1:410089/151‑1 (MQ=255)                                         cTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGAt                                                                                                           <  1:71276/151‑1 (MQ=255)                                          tGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGAtt                                                                                                          <  1:101777/151‑1 (MQ=255)                                             tGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTAATTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAAt                                                                                                       <  2:391105/151‑1 (MQ=255)                                                   actgtggactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAAcc                                                                                                 <  2:30487/151‑1 (MQ=255)                                                        ggactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCttttt                                                                                            <  2:195629/151‑1 (MQ=255)                                                         gactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTa                                                                                           >  2:147552/1‑151 (MQ=255)                                                           ctgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTAcc                                                                                         <  1:235024/151‑1 (MQ=255)                                                               aCCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAAt                                                                                     <  1:73877/151‑1 (MQ=255)                                                               aCCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAAt                                                                                     <  2:431819/151‑1 (MQ=255)                                                                     gTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTGTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTCACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTc                                                                               <  2:101315/151‑1 (MQ=255)                                                                         aaaTCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATaa                                                                           >  1:228565/1‑151 (MQ=255)                                                                              ttGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATg                                                                      <  1:428017/151‑1 (MQ=255)                                                                                gAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATCCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGtc                                                                    <  2:299105/151‑1 (MQ=255)                                                                                 aaCATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGACCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGtct                                                                   <  1:117896/151‑1 (MQ=255)                                                                                   cATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTcc                                                                 <  1:133536/151‑1 (MQ=255)                                                                                             tACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAAtt                                                       <  1:123249/151‑1 (MQ=255)                                                                                               cTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccac                                                                                           >  2:295101‑M2/1‑55 (MQ=255)                                                                                               cTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccac                                                                                           <  1:295101‑M2/113‑59 (MQ=255)                                                                                                tttGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccacagtccttcaccagttgatgtgaaagcaggtgaatacgaa                                                    <  2:188921‑M2/151‑98 (MQ=255)                                                                                                tttGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGaa                                                    <  1:209932/151‑1 (MQ=255)                                                                                                  tGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAatt                                                  <  2:43134/151‑1 (MQ=255)                                                                                                             aTGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTTATACTACAGATCCATCTCCGATTAATACAACCTTTTTACTAAATGTTTTCATAATTATGTCTCCTAACTTAATTGAATTTAAGTTACTCg                                       <  2:362374/151‑1 (MQ=255)                                                                                                                 cAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGAc                                   <  2:345617/151‑1 (MQ=255)                                                                                                                 cAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGAc                                   >  2:301052/1‑151 (MQ=255)                                                                                                                   ataatTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTa                                 >  1:162131/1‑151 (MQ=255)                                                                                                                      atTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTacaa                              >  1:99433/1‑150 (MQ=255)                                                                                                                                   caGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTACACGTAAAAATATCta                 <  1:147552/151‑1 (MQ=255)                                                                                                                                                  tAACTATTGCAAAGGCCTATCTTGATCCTACAGATCCATCTCCGATTAATACAGCCTTTTTACCAAACGTTTTCATACTTATGTCTCCTAACCTAATTGAATTTATTTTACACTTTACTACACGTAAAAATATCTATACTGAAATTAAAGa  >  2:94607/1‑151 (MQ=255)                                                                                                                                                  tAACCATTGCAAAGGCATAGCTTTATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTACACGTAAAAATATCTATACTGAAATTAAAGa  <  1:115579/151‑1 (MQ=255)                                                                                                                                                  tAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTCCACGTGACTACACGTAAAAATCTCTATACTGAAATTAAAGa  >  2:94660/1‑151 (MQ=255)                                                                                                                                                  tAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTACACGTAAAAATATCTATACTGAAATTAAAGa  <  1:17526/151‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGTGACTACACGTAAAAATATCTATACTGAAATTAAAGA  >  CP000730/2738603‑2738898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.