| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2738713 | 44 (1.490) | 3 (0.110) | 3/280 | 1.3 | 7.2% | intergenic (+1917/‑797) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | = 2738751 | 36 (1.300) | intergenic (+1955/‑759) | panE2/USA300HOU_2595 | 2‑dehydropantoate 2‑reductase/APC family amino acid‑polyamine‑organocation transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGT > CP000730/2738565‑2738862 | gCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTc > 2:451964/1‑151 (MQ=255) ttttGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCaa < 2:83531/151‑1 (MQ=255) ttGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCaata < 1:451964/151‑1 (MQ=255) aGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAAtt < 2:160952/151‑1 (MQ=255) gTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTAc < 1:151195/151‑1 (MQ=255) tGCACCAGCTGTAATAACATCTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACa < 1:24327/151‑1 (MQ=255) cACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACaaa < 2:201276/151‑1 (MQ=255) aCCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTGCGTATTCCCCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAAt < 1:399998/151‑1 (MQ=255) cTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATtcatc < 1:198393/151‑1 (MQ=255) tGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATtcatca > 2:133536/1‑151 (MQ=255) tGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATtcatca < 1:231974/151‑1 (MQ=255) acTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCtt > 1:43134/1‑151 (MQ=255) cTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTg < 1:179162/151‑1 (MQ=255) tCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTaa > 2:235024/1‑151 (MQ=255) tCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTaa > 2:217911/1‑151 (MQ=255) gCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACca > 2:127955‑M2/1‑149 (MQ=255) tCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattg > 1:91653‑M2/1‑146 (MQ=255) cTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgc > 1:97460‑M2/1‑145 (MQ=255) cAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGGAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACCTCTGCGTTGACTTTGTCTTTTGCAATGTCAATGATTACAACTTCTTCAGCAGCGCGCTGCGTAAGCATCGCAAAgg < 2:376509/151‑1 (MQ=255) cAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGc < 2:204819/125‑1 (MQ=255) cAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGc > 1:204819/1‑125 (MQ=255) aGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGc < 1:107686/151‑1 (MQ=255) ttCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGgttacgcaaggtgttgctgatgaatttgtaattattgacattgcaaaagacaaa < 2:188921‑M1/151‑55 (MQ=255) gTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCtt < 1:202187/151‑1 (MQ=255) cACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATcc < 2:363858/151‑1 (MQ=255) gCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAg < 2:127087/151‑1 (MQ=255) caTCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCAtc > 2:17526/1‑151 (MQ=255) aaCTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCg > 2:254914/1‑151 (MQ=255) cTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGAt < 1:71276/151‑1 (MQ=255) cTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGAt < 1:410089/151‑1 (MQ=255) tGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGAtt < 1:101777/151‑1 (MQ=255) tGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTAATTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAAt < 2:391105/151‑1 (MQ=255) actgtggactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAAcc < 2:30487/151‑1 (MQ=255) gtggactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGgttacgcaaggtgttgctgatgaatttgtaattattgacattgcaaaagacaaag < 1:295101‑M1/113‑56 (MQ=255) gtggactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGgttacgcaaggtgttgctgatgaatttgtaattattgacattgcaaaagacaaag > 2:295101‑M1/1‑58 (MQ=255) ggactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCttttt < 2:195629/151‑1 (MQ=255) gactgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTa > 2:147552/1‑151 (MQ=255) ctgtACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTAcc < 1:235024/151‑1 (MQ=255) aCCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAAt < 2:431819/151‑1 (MQ=255) aCCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAAt < 1:73877/151‑1 (MQ=255) gTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTGTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTCACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTc < 2:101315/151‑1 (MQ=255) aaaTCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATaa > 1:228565/1‑151 (MQ=255) ttGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATg < 1:428017/151‑1 (MQ=255) gAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATCCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGtc < 2:299105/151‑1 (MQ=255) aaCATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGACCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGtct < 1:117896/151‑1 (MQ=255) cATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTcc < 1:133536/151‑1 (MQ=255) tACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAAtt < 1:123249/151‑1 (MQ=255) cTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccac < 1:295101‑M2/113‑59 (MQ=255) cTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccac > 2:295101‑M2/1‑55 (MQ=255) tttGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACcattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccacagtccttcaccagttgatgtgaaagcaggtgaatacgaa < 2:188921‑M2/151‑98 (MQ=255) tttGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGaa < 1:209932/151‑1 (MQ=255) tGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAatt < 2:43134/151‑1 (MQ=255) gCAATGgttacgcaaggtgttgctgatgaatttgtaattattgacattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccacagtccttcaccagttgatgtgaaagcaggtgaatacgaagactgtaaag > 1:97460‑M1/1‑6 (MQ=255) cAATGgttacgcaaggtgttgctgatgaatttgtaattattgacattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccacagtccttcaccagttgatgtgaaagcaggtgaatacgaagactgtaaaga > 1:91653‑M1/1‑5 (MQ=255) aTGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTTATACTACAGATCCATCTCCGATTAATACAACCTTTTTACTAAATGTTTTCATAATTATGTCTCCTAACTTAATTGAATTTAAGTTACTCg < 2:362374/151‑1 (MQ=255) tGgttacgcaaggtgttgctgatgaatttgtaattattgacattgcaaaagacaaagtaaaagcagatgttcaagatttaaaccatggtacagtccacagtccttcaccagttgatgtgaaagcaggtgaatacgaagactgtaaagatgc > 2:127955‑M1/1‑2 (MQ=255) | GCTTTTGAGGTGCACCAGCTGTAATAACAACTAAATCTGCATCTTTACAGTCTTCGTATTCACCTGCTTTCACATCAACTGGTGAAGGACTGTGGACTGTACCATGGTTTAAATCTTGAACATCTGCTTTTACTTTGTCTTTTGCAATGTCAATAATTACAAATTCATCAGCAACACCTTGCGTAACCATTGCAAAGGCATAGCTTGATCCTACAGATCCATCTCCGATTAATACAACCTTTTTACCAAATGTTTTCATAATTATGTCTCCTAACCTAATTGAATTTATTTTACACGT > CP000730/2738565‑2738862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |