New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2529098 =	16 (0.540)	3 (0.110)	3/276	1.3	18.9%	coding (840/1551 nt)	adcA	ABC superfamily ATP binding cassette transporter, binding protein
	?	CP000730	2529151 =	11 (0.400)					coding (787/1551 nt)	adcA	ABC superfamily ATP binding cassette transporter, binding protein
Rejected: Frequency below/above cutoff threshold.

GTCGTCTTTCACTTTAACACCACTGTCTAAAGCTTTACCGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAA  >  CP000730/2528948‑2529246                                                                                                                                                       |                                                                                                                                                     gtcgtcTTTCACTTTAACACCACTGTCTAAAGCTTTACCGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGtt                                                                                                                                                      >  2:123473/1‑151 (MQ=255) cagtattcatttcacatgaatcaattggatacttagctgattgttatggaattgttcaaaaaggtattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatatat                                                                                                                                                      >  2:206893‑M1/151‑151 (MQ=255)  agtattcatttcacatgaatcaattggatacttagctgattgttatggttttgttcaaaaaggtattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatatatt                                                                                                                                                     >  2:166686‑M1/150‑151 (MQ=255)      tttatttcacatggatcaattggatacttagctgattgttatggttttgtgcaaaaaggtgttcaaaacatgaatgctgaaaatacaaaaaaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatataTTCttt                                                                                                                                                 >  2:1303‑M1/146‑151 (MQ=255)       tttCACTTTAACACCACTGTCTAAAGCTTTACCGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTa                                                                                                                                                <  1:350442/151‑1 (MQ=255)       tcatttcacatgaatcaattggatacttagctgattgttatggttttgttcaaaaaggtattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatataTTCTTTa                                                                                                                                                >  2:292223‑M1/145‑151 (MQ=255)                        attggatacttagctgattgttatggttttgttcaaaaaggtattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatataTTCTTTACGAATTGTTTCAGTCAc                                                                                                                               <  1:17244‑M1/24‑1 (MQ=255)                                    tACCGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAAc                                                                                                                   <  2:436154/151‑1 (MQ=255)                                    tACCGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAAc                                                                                                                   <  1:245547/151‑1 (MQ=255)                                       caaacctttCAATATTATATTTCATTAATGATTGATACGTAATATTATCTTTTTTTTGTTGTTCTTTAATTAAAGACTCCATGTTGTAGAATTTTAAAGACTTCGCATCTATTTCTTTACGAATTCTTTCAGACACTTTATTCGCAACAtt                                                                                                                >  2:151766/7‑151 (MQ=255)                                       cGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACAtt                                                                                                                <  1:259942/151‑1 (MQ=255)                                             tttCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTTTTTTGTTTTTTATTTAAAGACTCCATGTTGTATAATTTTAAAGTCTTCGCTTCTGTTTCTTTACGAATTGTTTCATTCACTTTACTCGCAATATTATCttt                                                                                                          >  2:404442/1‑150 (MQ=255)                                               tggttttgttcaaaaaggtattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatataTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGt                                                                                                        >  1:5646‑M1/105‑151 (MQ=255)                                                   tatTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAg                                                                                                    <  1:199740/151‑1 (MQ=255)                                                                 tattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatataTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCAt                                                                                      >  2:17244‑M1/87‑151 (MQ=255)                                                                                   ttatCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTCGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCtt                                                                    <  2:425755/151‑1 (MQ=255)                                                                                                 ttgttCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGtt                                                      <  2:99304/151‑1 (MQ=255)                                                                                                      cTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTc                                                 >  2:51083/1‑151 (MQ=255)                                                                                                       tttatttaAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCCCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCt                                                >  2:195381/1‑151 (MQ=255)                                                                                                            ttaAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTtg                                           >  1:190173/1‑151 (MQ=255)                                                                                                                                      aaaGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGCTGGATCTTCAGCATTCATGtttt                 >  1:442452/1‑151 (MQ=255)                                                                                                                                             tCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATAcc          <  2:133644/151‑1 (MQ=255)                                                                                                                                                     gTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGaa  >  1:355769/1‑151 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GTCGTCTTTCACTTTAACACCACTGTCTAAAGCTTTACCGATATTTTCAATATTAGATTTCATTAATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAA  >  CP000730/2528948‑2529246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.