New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2529098 =	16 (0.540)	3 (0.110)	3/276	1.3	18.9%	coding (840/1551 nt)	adcA	ABC superfamily ATP binding cassette transporter, binding protein
	?	CP000730	2529151 =	11 (0.400)					coding (787/1551 nt)	adcA	ABC superfamily ATP binding cassette transporter, binding protein
Rejected: Frequency below/above cutoff threshold.

AATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAATTGATTCATGTGAAATGAATACTG  >  CP000730/2529012‑2529300                                                                                                                                            |                                                                                                                                                      tattcaaaacatgaatgctgaagatccatcacaaaaagaattaactaaaattgttaaagaaattagagatagcaatgctaaatataTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCAt                                                                                                                                            >  2:17244‑M1/87‑151 (MQ=255)                   ttatCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTCGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCtt                                                                                                                          <  2:425755/151‑1 (MQ=255)                                 ttgttCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGtt                                                                                                            <  2:99304/151‑1 (MQ=255)                                      cTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTc                                                                                                       >  2:51083/1‑151 (MQ=255)                                       tttatttaAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCCCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCt                                                                                                      >  2:195381/1‑151 (MQ=255)                                            ttaAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTtg                                                                                                 >  1:190173/1‑151 (MQ=255)                                                                      aaaGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGCTGGATCTTCAGCATTCATGtttt                                                                       >  1:442452/1‑151 (MQ=255)                                                                           atgctaaatatattctttacgaagataatgttgcgaataaagtgactgaaacaattcgtaaagaaTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATa                                                                  >  2:17244‑M2/66‑151 (MQ=255)                                                                             tCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATAcc                                                                <  2:133644/151‑1 (MQ=255)                                                                                     gTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGaa                                                        >  1:355769/1‑151 (MQ=255)                                                                                            TACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTtgtg                                                                                               <  1:210611‑M1/105‑1 (MQ=255)                                                                                            TACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTtgtg                                                                                               >  2:210611‑M1/1‑105 (MQ=255)                                                                                             acgaagataatgttgcgaataaagtgactgaaacaattcgtaaagaaTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCa                                                >  1:5646‑M2/48‑151 (MQ=255)                                                                                               GAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATa                                              <  1:341730‑M1/151‑1 (MQ=255)                                                                                                 ATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAAc                                            <  2:454684‑M1/151‑1 (MQ=255)                                                                                                                  aTTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCa                           <  1:64777/151‑1 (MQ=255)                                                                                                                    gtgactgaaacaattcgtaaagaaTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAAt                         <  1:17244‑M2/127‑1 (MQ=255)                                                                                                                         aCATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAATTGAtt                    >  1:188994/1‑151 (MQ=255)                                                                                                                             tATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAATTGATTCAtg                <  1:396021/151‑1 (MQ=255)                                                                                                                                     taaagaaTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAATTGATTCATGTGAAATGa        >  2:292223‑M2/8‑151 (MQ=255)                                                                                                                                      aaagaaTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTTTTTTGTATTTTCAGCATTCATGTTTTGAACACCTTTTTGCACAAAACCATAACAATCAGCTAAGTATCCAATTGATCCATGTGAAATaaa       >  2:1303‑M2/7‑151 (MQ=255)                                                                                                                                          aaTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAATTGATTCATGTGAAATGAATACt   >  2:166686‑M2/3‑151 (MQ=255)                                                                                                                                           aTATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAATTCCATAACAATCAGCTAAGTATCCAATTGATTCATGTGAAATGAATACTg  >  2:206893‑M2/2‑151 (MQ=255)                                                                                                                                            |                                                                                                                                                      AATGATTGATACGTAATATTATCTTTTTTCTGTTGTTCTTTATTTAAAGACTCCATGTTGTAGAATTTTAAAGGCTTCGCATCTGTTTCTTTACGAATTGTTTCAGTCACTTTATTCGCAACATTATCTTCGTAAAGAATATATTTAGCATTGCTATCTCTAATTTCTTTAACAATTTTAGTTAATTCTTTTTGTGATGGATCTTCAGCATTCATGTTTTGAATACCTTTTTGAACAAAACCATAACAATCAGCTAAGTATCCAATTGATTCATGTGAAATGAATACTG  >  CP000730/2529012‑2529300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.