| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 811180 | 40 (1.070) | 3 (0.090) | 3/254 | 5.8 | 8.4% | intergenic (+22/‑111) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein |
| ? | CP000730 | = 811226 | 29 (0.850) | intergenic (+68/‑65) | nrdF/USA300HOU_0757 | ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/811032‑811180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaccttcaACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACCATCACC < CP000730/811226‑811087 CATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAA < 2:281907/141‑1 ATGCCTTAGATACAACAACTAAAATCCAATACTGCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCA < 1:224426/141‑1 ATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATAATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCA > 1:142278/1‑141 GGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGT < 1:281071/141‑1 TGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGG < 2:58983/141‑1 TATGTATTAGCATTAAACGTAGAAGCATTACAAGATGAGGACGTTTTGTTTTACAACATATAACAATTAGATTAAAAGACCTGCAACATGTAGGAGACAATACGAAACGATTCGCTATTGCCCTTTACATGTGAAGGTCTT < 1:120214/141‑1 AAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACAT > 2:293820/1‑141 AAAGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTAAATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACAT < 1:235733/141‑1 AGACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAA < 1:167910/141‑1 GACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAAC > 2:130749/1‑141 ACCTTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACC > 2:383717/1‑141 TTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACCATC < 2:204363/141‑1 TTCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTAATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACCATC > 2:393603/1‑141 TCAACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACCATCA > 1:415946/1‑141 AACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGATGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACCATTACC < 2:359629/141‑1 CATTGAGAATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/811032‑811180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaccttcaACATGTAGGAGACAAGACGAAACGAATCGCTATTTCCCTTTACATGTGAAGGTCTTTTAATTTAATTGTTATTTGTTGTCAAATACAAAGTCATCATCTTGTAATGCTTCTACGTTTAATGCTAATACATAACCATCACC < CP000730/811226‑811087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |