New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 811180	40 (1.070)	3 (0.090)	3/254	5.8	8.4%	intergenic (+22/‑111)	nrdF/USA300HOU_0757	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
	?	CP000730	= 811226	29 (0.850)					intergenic (+68/‑65)	nrdF/USA300HOU_0757	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGC  >  CP000730/811040‑811314                                                                                                                                             |                                                                                                                                       aTGCCTTAGATACAACAACTAAAATCCAATACTGCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTca                                                                                                                                        <  1:224426/141‑1 (MQ=255) aTGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATAATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTca                                                                                                                                        >  1:142278/1‑141 (MQ=255)   gCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTcaca                                                                                                                                      <  1:216859/141‑1 (MQ=255)         aaTACAACCACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTaaa                                                                                                                                <  1:272469/140‑1 (MQ=255)                  acTAAAAACCATAACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAg                                                                                                                       <  1:394116/141‑1 (MQ=255)                    tAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCg                                                                                                                     <  1:76025/141‑1 (MQ=255)                     aaaaaCCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGa                                                                                                                    >  1:110500/1‑141 (MQ=255)                     aaaaaCCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGa                                                                                                                    <  2:37463/141‑1 (MQ=255)                       aaaCCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGAtt                                                                                                                  >  2:298002/1‑141 (MQ=255)                              gACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGAttcgtttcg                                                                                                           <  1:240621/141‑1 (MQ=255)                               aCTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGAttcgtttcgt                                                                                                          >  1:50144/1‑141 (MQ=255)                                              aaGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGACATAGCGATTCGTTTCGTCTTGTCTCCTACTTg                                                                                           >  1:385812/1‑141 (MQ=255)                                                ggTAATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCATCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGtt                                                                                         >  2:359629/1‑141 (MQ=255)                                                  tGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGa                                                                                       <  1:415946/141‑1 (MQ=255)                                                   gATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATTACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGaa                                                                                      <  2:393603/141‑1 (MQ=255)                                                   gATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGaa                                                                                      >  2:204363/1‑141 (MQ=255)                                                      ggTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGt                                                                                   <  2:383717/141‑1 (MQ=255)                                                       gTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTc                                                                                  <  2:130749/141‑1 (MQ=255)                                                        ttATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCt                                                                                 >  1:167910/1‑141 (MQ=255)                                                          aTGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATTTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCttt                                                                               >  1:235733/1‑141 (MQ=255)                                                          aTGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCttt                                                                               <  2:293820/141‑1 (MQ=255)                                                             tATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtttttt                                                                            >  2:202011/1‑141 (MQ=255)                                                             tATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtttttt                                                                            <  2:1791/141‑1 (MQ=255)                                                                        aaCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCt                                                                 <  2:43693/141‑1 (MQ=255)                                                                             aGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTc                                                            <  2:307715/141‑1 (MQ=255)                                                                                    ttACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTa                                                                                               <  1:55724/99‑1 (MQ=255)                                                                                    ttACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTa                                                                                               >  2:55724/1‑99 (MQ=255)                                                                                    ttACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGa                                                     >  2:297952/1‑141 (MQ=255)                                                                                          gatgatGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGa                                               >  2:205056/1‑141 (MQ=255)                                                                                              atgaCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTaa                                           >  2:359552/1‑141 (MQ=255)                                                                                                 aCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGaa                                        <  1:359552/141‑1 (MQ=255)                                                                                                      gTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCaa                                   <  1:287051/141‑1 (MQ=255)                                                                                                       tATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAAt                                  <  2:256154/141‑1 (MQ=255)                                                                                                               aacaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTAGCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAg                          <  1:306158/141‑1 (MQ=255)                                                                                                                acaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGa                         <  1:215248/141‑1 (MQ=255)                                                                                                                    aTAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTa                     <  2:243327/141‑1 (MQ=255)                                                                                                                       aCAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACaa                  <  1:34765/141‑1 (MQ=255)                                                                                                                           ttagattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt              <  1:26473/141‑1 (MQ=255)                                                                                                                           ttaaattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt              <  1:43006/141‑1 (MQ=255)                                                                                                                           ttaaattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt              <  1:295027/141‑1 (MQ=255)                                                                                                                            taaattaaaATACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTa             <  1:298002/141‑1 (MQ=255)                                                                                                                                       aCCTTCACATGTAAAGGGAAATGGCGATTCGTTTCGTCTTATCTCCTACAGGTTGAAGGTCTTTTTTTATGTGTATCTATCTCATAATGAGACTGAGTAAGAAATCAATGCTCTATAATCTACAATGCTATTTATAttttc  >  2:241501/1‑138 (MQ=255)                                                                                                                                             |                                                                                                                                       ATGCCTTAGATACAACAACTAAAAACCATGACTTCTTCTCAGTAAAAGGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGC  >  CP000730/811040‑811314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.