New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 811180	40 (1.070)	3 (0.090)	3/254	5.8	8.4%	intergenic (+22/‑111)	nrdF/USA300HOU_0757	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
	?	CP000730	= 811226	29 (0.850)					intergenic (+68/‑65)	nrdF/USA300HOU_0757	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAAC  >  CP000730/811087‑811362                                                                                                                                            |                                                                                                                                         ggTAATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCATCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGtt                                                                                                                                         >  2:359629/1‑141 (MQ=255)   tGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGa                                                                                                                                       <  1:415946/141‑1 (MQ=255)    gATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATTACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGaa                                                                                                                                      <  2:393603/141‑1 (MQ=255)    gATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGaa                                                                                                                                      >  2:204363/1‑141 (MQ=255)       ggTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGt                                                                                                                                   <  2:383717/141‑1 (MQ=255)        gTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTc                                                                                                                                  <  2:130749/141‑1 (MQ=255)         ttATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCt                                                                                                                                 >  1:167910/1‑141 (MQ=255)           aTGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATTTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCttt                                                                                                                               >  1:235733/1‑141 (MQ=255)           aTGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCttt                                                                                                                               <  2:293820/141‑1 (MQ=255)              tATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtttttt                                                                                                                            <  2:1791/141‑1 (MQ=255)              tATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCtttttt                                                                                                                            >  2:202011/1‑141 (MQ=255)                         aaCGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCt                                                                                                                 <  2:43693/141‑1 (MQ=255)                              aGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTc                                                                                                            <  2:307715/141‑1 (MQ=255)                                     ttACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGa                                                                                                     >  2:297952/1‑141 (MQ=255)                                           gatgatGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGa                                                                                               >  2:205056/1‑141 (MQ=255)                                               atgaCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTaa                                                                                           >  2:359552/1‑141 (MQ=255)                                                  aCTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGaa                                                                                        <  1:359552/141‑1 (MQ=255)                                                       gTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCaa                                                                                   <  1:287051/141‑1 (MQ=255)                                                        tATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAAt                                                                                  <  2:256154/141‑1 (MQ=255)                                                                aacaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTAGCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAg                                                                          <  1:306158/141‑1 (MQ=255)                                                                 acaaATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGa                                                                         <  1:215248/141‑1 (MQ=255)                                                                     aTAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTa                                                                     <  2:243327/141‑1 (MQ=255)                                                                        aCAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACaa                                                                  <  1:34765/141‑1 (MQ=255)                                                                            ttagattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt                                                              <  1:26473/141‑1 (MQ=255)                                                                            ttaaattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt                                                              <  1:295027/141‑1 (MQ=255)                                                                            ttaaattaaaAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCt                                                              <  1:43006/141‑1 (MQ=255)                                                                             taaattaaaATACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTa                                                             <  1:298002/141‑1 (MQ=255)                                                                                        aCCTTCACATGTAAAGGGAAATGGCGATTCGTTTCGTCTTATCTCCTACAGGTTGAAGGTCTTTTTTTATGTGTATCTATCTCATAATGAGACTGAGTAAGAAATCAATGCTCTATAATCTACAATGCTATTTATAttttc                                                  >  2:241501/1‑138 (MQ=255)                                                                                                aTGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTg                                          >  1:348443/1‑141 (MQ=255)                                                                                                     aaGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCggg                                     >  1:265493/1‑141 (MQ=255)                                                                                                               gCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAacac                           <  2:50167/141‑1 (MQ=255)                                                                                                                      gtttcgtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTCTCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGATATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAgaa                    >  2:45749/1‑139 (MQ=255)                                                                                                                          cgtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCg                <  1:300732/141‑1 (MQ=255)                                                                                                                          cgtCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCCAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCg                <  1:384931/141‑1 (MQ=255)                                                                                                                           gtCGTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGAATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCgg               <  2:385812/141‑1 (MQ=255)                                                                                                                                      tACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGAAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTa    >  2:392136/1‑141 (MQ=255)                                                                                                                                       aCATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTaa   >  1:12388/1‑141 (MQ=255)                                                                                                                                        cATGTTGAAGGTCTTTTTTTATGTGTAGCTACCTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAAc  <  1:419802/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                         GGTGATGGTTATGTATTAGCATTAAACGTAGAAGCATTACAAGATGATGACTTTGTATTTGACAACAAATAACAATTAAATTAAAAGACCTTCACATGTAAAGGGAAATAGCGATTCGTTTCGTCTTGTCTCCTACATGTTGAAGGTCTTTTTTTATGTGTATCTAACTCATTATGAGTCTGAGTAAGAAATCAATGCTCTAAGATGTACAATGCTATTTATATTGGCAGTAGTTGGCGGGGCCCCAACACAGAAGCAGGCGGAAAGTCAGCTAAC  >  CP000730/811087‑811362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.