New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1980867 =	37 (0.990)	4 (0.110)	4/258	5.3	10.6%	intergenic (‑38/+70)	USA300HOU_1840/yheA	hypothetical protein/transcriptional regulator
	?	CP000730	1980913 =	33 (0.950)					intergenic (‑84/+24)	USA300HOU_1840/yheA	hypothetical protein/transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1981015‑1980867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTG  >  CP000730/1980913‑1981051                                                                                                                                                                                                                                                                                                  AATTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA                                                                                                                                                     <  1:278232/141‑1   TTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC                                                                                                                                                   <  2:304811/141‑1   TTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC                                                                                                                                                   >  1:44738/1‑141    TTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG                                                                                                                                                  <  1:106150/141‑1     TTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC                                                                                                                                                 <  2:273389/141‑1     TTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC                                                                                                                                                 <  2:273381/141‑1       ggcggtgctTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTT                                                                                                                                               <  2:344161/132‑1        GGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT                                                                                                                                              <  1:407623/141‑1                                                                                                         AAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACC                                             >  1:335673/1‑141                                                                                                               ATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAAT                                       >  1:121262/1‑141                                                                                                                     CACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTG                                 >  1:378555/1‑141                                                                                                                           TGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATC                           >  1:367147/1‑141                                                                                                                                               CGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAA       <  1:365979/141‑1                                                                                                                                                   TTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATT   <  2:297134/141‑1                                                                                                                                                    TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTG  <  1:212385/141‑1                                                                                                                                                                                                                                                                                                  AATTTTCGGTACTTCTAAAATGAGAGAAGCTGAAACATACTTTAACAGAAATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1981015‑1980867 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTG  >  CP000730/1980913‑1981051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.