New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1980867 =	37 (0.990)	4 (0.110)	4/258	5.3	10.6%	intergenic (‑38/+70)	USA300HOU_1840/yheA	hypothetical protein/transcriptional regulator
	?	CP000730	1980913 =	33 (0.950)					intergenic (‑84/+24)	USA300HOU_1840/yheA	hypothetical protein/transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTGCT  >  CP000730/1980777‑1981053                                                                                                                                         |                                                                                                                                             acaacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat                                                                                                                                          >  1:307708/1‑141 (MQ=255)   aacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                                                                                                                        <  1:334242/141‑1 (MQ=255)      aTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatt                                                                                                                                     <  1:300881/141‑1 (MQ=255)             ttCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGta                                                                                                                              <  1:202160/141‑1 (MQ=255)             ttCATTATACAACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGTGATGCCTCACCTCACGAAACAGGTGTGCTACATCGCTTTTATTATTTATTAAAAGta                                                                                                                              <  2:63643/141‑1 (MQ=255)                 ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                                                                          <  1:407741/141‑1 (MQ=255)                                 atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                                                                          >  2:374033/1‑141 (MQ=255)                                 atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                                                                          <  1:307775/141‑1 (MQ=255)                                    ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt                                                                                                       <  1:150778/141‑1 (MQ=255)                                           ttttttttCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATTGCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGTTCTAGATATGTTCTAATTcttctt                                                                                                >  2:320021/8‑141 (MQ=255)                                                  tCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                                                                         <  2:147523/141‑1 (MQ=255)                                                     tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                                                                      <  2:206610/141‑1 (MQ=255)                                                             tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt                                                                              <  2:69984/141‑1 (MQ=255)                                                               tGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTAt                                                                            >  1:283931/1‑141 (MQ=255)                                                                  tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt                                                                         >  2:212385/1‑141 (MQ=255)                                                                   gaagttattattaGTGTACATACAAAAAGTGATGCCTCAGCTCTCGAAACAGGTGTGATACATCGCTTTTATTATTTATTAAGAGTATATAGGCCTAGATATGTACTACTTCTTCTTTAGCATTTCTGTTAAAGTATGttt                                                                        <  2:335399/137‑1 (MQ=255)                                                                                        acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAg                                                   <  2:307708/141‑1 (MQ=255)                                                                                         caAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGt                                                  >  2:237058/1‑141 (MQ=255)                                                                                            aaaGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTAcc                                               >  1:407623/1‑141 (MQ=255)                                                                                             aaGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTaagcaccgcc                                              >  2:344161/1‑132 (MQ=255)                                                                                               gCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGaa                                            >  2:273389/1‑141 (MQ=255)                                                                                               gCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGaa                                            >  2:273381/1‑141 (MQ=255)                                                                                                cGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGaaa                                           >  1:106150/1‑141 (MQ=255)                                                                                                 gATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGaaaa                                          >  2:304811/1‑141 (MQ=255)                                                                                                 gATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGaaaa                                          <  1:44738/141‑1 (MQ=255)                                                                                                   tGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAAtt                                        >  1:278232/1‑141 (MQ=255)                                                                                                            tctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTa                               <  2:26204/141‑1 (MQ=255)                                                                                                              tcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATc                             <  1:374033/141‑1 (MQ=255)                                                                                                               ggAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTTAAGTATGTTTCAGCTTCTCTCGTTTTAGAAGTACCGAAAATTGGTTGGTTATCt                            <  2:67557/140‑1 (MQ=255)                                                                                                               cGAAACAGGTGTGTTACACCGCTTTTATTATTTATTAACAGTATATAGGCCTAGATATGTACTATTTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGACAATTGGTTGGTTATCt                            >  2:322724/1‑141 (MQ=255)                                                                                                                    cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGAtt                       >  2:95325/1‑141 (MQ=255)                                                                                                                           gtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATaca                <  2:369501/141‑1 (MQ=255)                                                                                                                           gtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATaca                <  2:62102/141‑1 (MQ=255)                                                                                                                                  cGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATaaa         <  1:365979/141‑1 (MQ=255)                                                                                                                                      tttattatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATAtt     <  2:297134/141‑1 (MQ=255)                                                                                                                                       ttattatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTg    <  1:212385/141‑1 (MQ=255)                                                                                                                                         attatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTGCt  >  1:70595/1‑141 (MQ=255)                                                                                                                                         |                                                                                                                                             ACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGTACCGAAAATTGGTTGGTTATCTGGATTTAATACACGATAAATATTGCT  >  CP000730/1980777‑1981053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.