New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1980867 =	37 (0.990)	4 (0.110)	4/258	5.3	10.6%	intergenic (‑38/+70)	USA300HOU_1840/yheA	hypothetical protein/transcriptional regulator
	?	CP000730	1980913 =	33 (0.950)					intergenic (‑84/+24)	USA300HOU_1840/yheA	hypothetical protein/transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGT  >  CP000730/1980728‑1981005                                                                                                                                            |                                                                                                                                           tCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaa                                                                                                                                           <  2:20576/141‑1 (MQ=255) tCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaa                                                                                                                                           <  1:303590/141‑1 (MQ=255)   aTAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACaaaaa                                                                                                                                         >  2:44738/1‑141 (MQ=255)    tAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAg                                                                                                                                        >  1:62102/1‑141 (MQ=255)       atatGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGa                                                                                                                                     >  1:297134/1‑141 (MQ=255)        tatGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGAt                                                                                                                                    >  2:334242/1‑141 (MQ=255)          tGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGc                                                                                                                                  >  1:26204/1‑141 (MQ=255)          tGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGc                                                                                                                                  >  1:226540/1‑141 (MQ=255)            ataataAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTTATTAATCATTTCATTTTATGCTCAATTTATTATTATTTTATATACATAAAGCGATGACt                                                                                                                                >  2:382342/1‑141 (MQ=255)             tgatccttaGTGCATTCATAATTGTGTATCCTTTGTTACACCATAGTTATTCGTTATACCACTATTTTTATTTTTTAATTCATTTAGCCTTTCACTTTCTGCTCAATTTATTATTAGTTTACAAACAAAAAGCGATGCCTc                                                                                                                               <  2:23403/134‑1 (MQ=255)                     aGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCg                                                                                                                       >  1:67557/1‑141 (MQ=255)                      gTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTTCGCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGa                                                                                                                      <  1:305680/141‑1 (MQ=255)                      gTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGa                                                                                                                      <  1:382342/141‑1 (MQ=255)                         cATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAAc                                                                                                                   >  1:69984/1‑141 (MQ=255)                                 aTTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGgtgtgt                                                                                                           <  1:136351/141‑1 (MQ=255)                                  ttttGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGtt                                                                                                          >  1:114657/1‑141 (MQ=255)                                   tttGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa                                                                                                         <  1:191010/141‑1 (MQ=255)                                          ccTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCt                                                                                                  <  1:73428/141‑1 (MQ=255)                                             ttGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCtttt                                                                                               <  2:181807/141‑1 (MQ=255)                                                  acaacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat                                                                                          >  1:307708/1‑141 (MQ=255)                                                    aacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                                                                        <  1:334242/141‑1 (MQ=255)                                                       aTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatt                                                                                     <  1:300881/141‑1 (MQ=255)                                                              ttCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGta                                                                              <  1:202160/141‑1 (MQ=255)                                                              ttCATTATACAACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGTGATGCCTCACCTCACGAAACAGGTGTGCTACATCGCTTTTATTATTTATTAAAAGta                                                                              <  2:63643/141‑1 (MQ=255)                                                                  ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                          <  1:407741/141‑1 (MQ=255)                                                                                  atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                          <  1:307775/141‑1 (MQ=255)                                                                                  atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                          >  2:374033/1‑141 (MQ=255)                                                                                     ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt                                                       <  1:150778/141‑1 (MQ=255)                                                                                            ttttttttCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATTGCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGTTCTAGATATGTTCTAATTcttctt                                                >  2:320021/8‑141 (MQ=255)                                                                                                   tCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAtt                                         <  2:147523/141‑1 (MQ=255)                                                                                                      tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                      <  2:206610/141‑1 (MQ=255)                                                                                                              tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt                              <  2:69984/141‑1 (MQ=255)                                                                                                                tGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTAt                            >  1:283931/1‑141 (MQ=255)                                                                                                                   tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt                         >  2:212385/1‑141 (MQ=255)                                                                                                                    gaagttattattaGTGTACATACAAAAAGTGATGCCTCAGCTCTCGAAACAGGTGTGATACATCGCTTTTATTATTTATTAAGAGTATATAGGCCTAGATATGTACTACTTCTTCTTTAGCATTTCTGTTAAAGTATGttt                        <  2:335399/137‑1 (MQ=255)                                                                                                                                         acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAg   <  2:307708/141‑1 (MQ=255)                                                                                                                                          caAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGt  >  2:237058/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                           TCATAAATATGATAATAAATAGTGCATTCATAATTTTGACTCCTTTGTGACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAAGT  >  CP000730/1980728‑1981005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.