New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	57551 =	62 (0.950)	5 (0.080)	4/242	NT	8.6%	coding (618/621 nt)	USA300HOU_0048	hypothetical membrane protein
	?	CP000730	57600 =	48 (0.780)					intergenic (+46/+871)	USA300HOU_0048/USA300HOU_0049	hypothetical membrane protein/hypothetical protein

GTATGTACTGAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/57697‑57551 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttatTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTAATCAGA  >  CP000730/57600‑57739                                                                                                                                                                                                                                                                                                 tTATGTACTCAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCCCAATTT                                                                                                                                                    >  1:571566/2‑141 GTATGTACTGAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTT                                                                                                                                                    >  2:145781/1‑141 GTATGTACTGAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTT                                                                                                                                                    >  2:377199/1‑141  TATGTACTGAGTACATAAGGGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTT                                                                                                                                                   >  2:26032/1‑141  TATGTACTGAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTT                                                                                                                                                   >  2:26108/1‑141   ATGTACTGAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTTT                                                                                                                                                  <  1:2149/141‑1      TACTCAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTTTTTA                                                                                                                                               >  1:707793/1‑141                                                                                              TTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTAC                                                       >  2:178060/1‑141                                                                                                           CAGAGCACCTCCATAACGTGGAGGATGCTCTATTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTG                                          <  1:742171/141‑1                                                                                                             GAGCACCTCCATAACGTGGAGGATGCTCTA‑TTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGAT                                       >  1:503056/1‑141                                                                                                             GAGCACCTCCATAACGTGGAGGATGCTCTA‑TTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGAT                                       >  1:656096/1‑141                                                                                                                                AGGATGCTCTATTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAA                     <  1:178060/141‑1                                                                                                                                           gttgTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTT          <  1:663052/137‑1                                                                                                                                             TTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACGCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTA        <  2:38011/141‑1                                                                                                                                                TTATTTAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTAATC     >  2:37089/1‑141                                                                                                                                                TTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTAATC     <  1:436882/141‑1                                                                                                                                                   TTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTTTTTTTTTTTTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTAATCAGA  >  2:175003/1‑141                                                                                                                                                   TTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTAATCAGA  >  1:585637/1‑141                                                                                                                                                                                                                                                                                                 GTATGTACTGAGTACATAAGAGATCGAACAGAAGCTAGAGAAAAAGGTCAAGGTAGAACTTATTAAGCATATTAAATTAATTAACTTGATACTTTTCAATAAAAAACAGAGCACCTCCATAACGTGGAGGATGCTCTATTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/57697‑57551 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttatTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTTCTACCTTGACCTTTTTCTCTAGCTTCTGTTCGATCTCTTATGTACTCAGTACATACTGGATTTTCTGTTAATTCATCAACTGTATTAGTTTAATCAGA  >  CP000730/57600‑57739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.