New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	190272 =	64 (0.980)	3 (0.050)	3/244	NT	5.1%	coding (824/1176 nt)	cap5P	capsular polysaccharide biosynthesis protein Cap5P
	?	CP000730	190304 =	52 (0.840)					coding (856/1176 nt)	cap5P	capsular polysaccharide biosynthesis protein Cap5P

TGTTCCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/190417‑190272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaatcgTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACATTTGGAAAACCTGTGTTGGTATTAAGGAATCATACAGAGCGTCCCGAAGGCGTTGAGGCGGGAACATCGAGAGTAATTGGCACAGATTAT  >  CP000730/190304‑190441                                                                                                                                                                                                                                                                                              TGTTCCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACCGGTTTTCCACCTGTAGCAGCCACCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTC                                                                                                                                                 <  1:744434/141‑1    TCCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGCGCCTCCTCTCGAATACCACCAGAATCTGTCAGCACGAGGTACGATCGACTTGTAAAACTATGCAACTCAAc                                                                                                                                              >  2:204585/1‑140    TCCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAAT                                                                                                                                              >  1:320015/1‑141     CCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATC                                                                                                                                             <  2:542643/141‑1     CCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATC                                                                                                                                             >  2:446371/1‑141      CCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATCG                                                                                                                                            >  2:617129/1‑141      CCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATCG                                                                                                                                            >  2:399864/1‑141      CCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAAGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATCG                                                                                                                                            >  2:500035/1‑141      CCGCCTCAACGCCTTCGGGACGCTCTGTATGATACCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATCa                                                                                                                                            <  1:305953/141‑2                                                                                                                   CGATTGATTTGTAAAATTATGGAACTCAATCGTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACA                                                                                            <  2:506199/80‑1                                                                                                                   CGATTGATTTGTAAAATTATGGAACTCAATCGTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACA                                                                                            >  1:506199/1‑80                                                                                                                        GATTTGTAAAATTATGGAACTCAATCGTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACATTTGGAAAACCTGTGTTGGTATTAAGGAATCATACAGAGCGTCCCGAAGGCGTTGAGGCGGGAACA                          >  1:35750/1‑141                                                                                                                                            TCAATCGTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACATTTGGAAAACCTGTGTTGGTATTAAGGAATCATACAGAGCGTCCCGAAGGCGTTGAGGCGGGAACATCGAGAGTAATTGGCACAGA      >  2:693378/1‑141                                                                                                                                              tATCGTGCCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCGACATTTGGAACACCTGTGTTGGTATTAAGGAATCATACAGAGCGTCCCGAAGGCGTTGAGGCGGGAACATCGAGAGTAATTGGCACAGCTT    <  2:435067/140‑1                                                                                                                                                TCGTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACATTTGGAAAACCTGTGTTGGTATTAAGGAATCATACAGAGCGTCCCGAAGGCGTTGAGGCGGGAACATCGAGAGTAATTGGCACAGATTAT  <  2:134951/141‑1                                                                                                                                                                                                                                                                                              TGTTCCCGCCTCAACGCCTTCGGGACGCTCTGTATGATTCCTTAATACCAACACAGGTTTTCCAAATGTAGGAGCCTCCTCTTGAATACCACCAGAATCTGTCAGCACGAGGTACGATTGATTTGTAAAATTATGGAACTCAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/190417‑190272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaatcgTACCTCGTGCTGACAGATTCTGGTGGTATTCAAGAGGAGGCTCCTACATTTGGAAAACCTGTGTTGGTATTAAGGAATCATACAGAGCGTCCCGAAGGCGTTGAGGCGGGAACATCGAGAGTAATTGGCACAGATTAT  >  CP000730/190304‑190441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.