| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1218705 = | 73 (1.120) | 8 (0.140) | 5/228 | NT | 11.3% | intergenic (+196/+67) | USA300HOU_1145/fbpA | possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein |
| ? | CP000730 | 1218759 = | 61 (1.060) | intergenic (+250/+13) | USA300HOU_1145/fbpA | possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein | |||||
AGCCTGGGTTTGTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1218857‑1218705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaggtgtttatttGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTTTAATTAATGT > CP000730/1218759‑1218894 AGCCTGGGTTTGTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGCTTATGAACTTATTCAAAACATGAACCAAACATAATCAAGTTGTAGACAAATAAACACCGCACAAAAGAAAGTAGTCCTTTGTTATGGTG > 1:31669/1‑141 GCCTGGGTTTGTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGA < 2:77918/141‑1 CTGGGTTTGTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGG < 1:289064/141‑1 GGTTTGTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGT > 1:495496/1‑141 GTTTGTAACATATGACAATCAAAAAACTTTGTAGGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTT > 2:362967/1‑141 GTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATT > 1:508560/1‑141 TCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTC < 1:118711/69‑1 TCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTC > 2:118711/1‑69 TCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTC < 1:118736/69‑1 TCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTC > 2:118736/1‑69 ACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATCGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTT > 1:30736/1‑141 AAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCA > 2:426910/1‑141 AGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCAC > 2:754714/1‑141 AGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCAC > 1:618530/1‑141 GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTT > 1:699639/1‑141 GAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTTTA < 1:443128/141‑1 AGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTTTAA > 2:293909/1‑141 TTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTTTAATTAATG < 2:446701/141‑1 TATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTTTAATTAATGT < 1:372815/141‑1 AGCCTGGGTTTGTAACATATGACAATCAAAAAACTTTGTATGCTACACCTGATTATGAACTTATTCAAAAAATGAAACAATCATAATCAAGTTGTCGACAAATAAACACCTCACAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1218857‑1218705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaggtgtttatttGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGTTTATGCACATTTTTAATTAATGT > CP000730/1218759‑1218894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |