New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1218705 =	73 (1.120)	8 (0.140)	5/228	NT	11.3%	intergenic (+196/+67)	USA300HOU_1145/fbpA	possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein
	?	CP000730	1218759 =	61 (1.060)					intergenic (+250/+13)	USA300HOU_1145/fbpA	possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein

TACCTATGTATTTCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGT  >  CP000730/1218565‑1218843                                                                                                                                             |                                                                                                                                            tACCTATGTATTTCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATtaaataata                                                                                                                                             <  1:285629/141‑1 (MQ=255)  aCCTATGTATTTCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATtaaataataa                                                                                                                                            >  2:662859/1‑141 (MQ=255)   ccTATGTATTTCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATtaaataataaa                                                                                                                                           >  2:255201/1‑141 (MQ=255)     acattaattaaaaatgtgcataaaccatcaggtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATa                                                                                                                                         <  1:372815‑M1/5‑1 (MQ=255)      cattaattaaaaatgtgcataaaccatcaggtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATaa                                                                                                                                        <  2:446701‑M1/6‑1 (MQ=255)      aTGTATTTCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATtaaataataaataa                                                                                                                                        <  2:156297/141‑1 (MQ=255)           tttCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACAcc                                                                                                                                   <  1:506051/141‑1 (MQ=255)           tttCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACAcc                                                                                                                                   <  2:427282/141‑1 (MQ=255)            ttaaaaatgtgcataaaccatcaggtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATAAACACCt                                                                                                                                  >  2:293909‑M1/130‑141 (MQ=255)             taaaaatgtgcataaaccatcaggtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATAAACACCTc                                                                                                                                 <  1:443128‑M1/13‑1 (MQ=255)               tATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCAc                                                                                                                               <  1:250935/141‑1 (MQ=255)               aaaatgtgcataaaccatcaggtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATAAACACCTCAc                                                                                                                               >  1:699639‑M1/127‑141 (MQ=255)                    tAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCAcaaaag                                                                                                                          <  1:178024/141‑6 (MQ=255)                       gTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGaa                                                                                                                       >  1:695123/1‑141 (MQ=255)                        tACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGaaa                                                                                                                      >  1:103839/1‑141 (MQ=255)                          cacaTTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAgg                                                                                                                    >  1:486453/1‑141 (MQ=255)                              ttAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGacta                                                                                                                <  1:255201/141‑1 (MQ=255)                                 gCATTTTAGTTTCACTCATCTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACATCGTTTAAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActt                                                                                                             <  2:658329/141‑1 (MQ=255)                                  cATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAACTACACACCTCACCATAAGAAAGGACTActtt                                                                                                            <  2:472899/141‑1 (MQ=255)                                   aTTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAGACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc                                                                                                           <  2:506166/141‑1 (MQ=255)                                    gtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTActttct                                                                                                          >  2:754714‑M1/106‑141 (MQ=255)                                    gtgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTActttct                                                                                                          >  1:618530‑M1/106‑141 (MQ=255)                                     tttATTTTCACTCAGGTTTTCAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAAGGAGCGCATTAAATAATAAATAGACACCTCACCATAAGAAAGGACTActttctt                                                                                                         <  2:312969/141‑1 (MQ=255)                                     tgcaaagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTActttctt                                                                                                         >  2:426910‑M1/105‑141 (MQ=255)                                       tAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCtt‑tt                                                                                                      >  2:678016/1‑141 (MQ=255)                                        aGTTTCCCTCATTTTTAAAACCACAAACATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttg                                                                                                     <  1:446356/141‑1 (MQ=255)                                        aGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttg                                                                                                     >  1:517948/1‑141 (MQ=255)                                         gTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgt                                                                                                    <  1:628621/141‑1 (MQ=255)                                         aagcctgggtttgtaacatatgacaatcaaaaaactttgtatgctacacctgattatgaacttattcaaaaaatgaaacgatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgt                                                                                                    >  1:30736‑M1/101‑141 (MQ=255)                                          tttCACTCATTTTTAAAATCACATAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg                                                                                                   >  2:255430/1‑141 (MQ=255)                                          tttCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg                                                                                                   >  2:648626/1‑141 (MQ=255)                                             cACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAgg                                                                                                >  1:539664/1‑141 (MQ=255)                                               cTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg                                                                                              >  1:693047/1‑141 (MQ=255)                                               cTCAGTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg                                                                                              >  2:269999/1‑141 (MQ=255)                                                tCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt                                                                                             <  2:423339/141‑1 (MQ=255)                                                 cATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGtt                                                                                            <  2:103157/141‑1 (MQ=255)                                                 cATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGtt                                                                                            >  1:381784/1‑141 (MQ=255)                                                  aTTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGttt                                                                                           <  2:236019/141‑1 (MQ=255)                                                  aTTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGtt                                                                                            <  1:279919/141‑1 (MQ=37)                                                   tttttAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTa                                                                                          >  2:76120/1‑141 (MQ=255)                                                     tttAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt                                                                                        <  1:359246/141‑1 (MQ=255)                                                       tAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTg                                                                                      >  2:698281/1‑141 (MQ=255)                                                         aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTc                                                                                    <  1:528107/141‑1 (MQ=255)                                                           aTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTTTCGa                                                                                  >  2:13661/1‑141 (MQ=255)                                                           aTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa                                                                                  >  1:643080/1‑141 (MQ=255)                                                             cacaAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTAtttattattt                                                                                <  2:449035/141‑8 (MQ=21)                                                              acaGAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGCTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTACTT‑TTGTGAGGTGTTTATTTCTCGACaa                                                                               >  2:11463/1‑141 (MQ=255)                                                              acaAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACaa                                                                               >  1:336776/1‑141 (MQ=255)                                                                  aGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg                                                                           <  1:135996/141‑1 (MQ=255)                                                                  aGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg                                                                           >  1:404892/1‑141 (MQ=255)                                                                          tGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAt                                                                   >  2:10845/1‑141 (MQ=255)                                                                           gTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt                                                                  >  2:528827/1‑141 (MQ=255)                                                                              aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                               <  1:490755/141‑1 (MQ=255)                                                                              aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                               <  2:247953/141‑1 (MQ=255)                                                                              aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                               <  1:205572/141‑1 (MQ=255)                                                                              aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                               <  1:605014/141‑1 (MQ=255)                                                                                ttAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCTATCAACGAATTAAATAATAAATAAACACCTCACCATGAGTAAGGACTACTTACTT‑TTGTGAGGTGTTTATTTGTCGGCACCTTGTTTATGGTTGTTTc                                                             <  2:750822/141‑1 (MQ=255)                                                                                ttAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGGACGCATTAAAGAGGAAATAAACTCCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTc                                                             <  1:662687/141‑1 (MQ=255)                                                                                  aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAt                                                           >  1:413199/1‑141 (MQ=255)                                                                                  aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAt                                                           <  2:581498/141‑1 (MQ=255)                                                                                    atgatgATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttt                                                         <  2:627769/141‑1 (MQ=255)                                                                                     tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt                                                        <  2:241642/141‑1 (MQ=255)                                                                                      gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTTTTTCAttttt                                                       >  2:424658/1‑141 (MQ=255)                                                                                                tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGATGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt                                             <  2:313798/141‑1 (MQ=255)                                                                                                  tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa                                           <  2:480839/141‑1 (MQ=255)                                                                                                     aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa                                        <  2:539664/141‑1 (MQ=255)                                                                                                      aaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTCTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAAt                                       >  1:151931/1‑141 (MQ=255)                                                                                                         acacGATTCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg                                    <  1:326700/141‑1 (MQ=255)                                                                                                           acGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgt                                  >  2:443128/1‑141 (MQ=255)                                                                                                              aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa                               <  1:645020/141‑1 (MQ=255)                                                                                                                 cTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCa                            <  2:336776/141‑1 (MQ=255)                                                                                                                   gaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa                                                                                                  >  2:118711‑M1/27‑69 (MQ=255)                                                                                                                   gaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa                                                                                                  <  1:118711‑M1/43‑1 (MQ=255)                                                                                                                   gaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa                                                                                                  <  1:118736‑M1/43‑1 (MQ=255)                                                                                                                   gaaacaatcataatcaagttgtcgacAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa                                                                                                  >  2:118736‑M1/27‑69 (MQ=255)                                                                                                                    cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATTATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc                         <  1:37043/141‑1 (MQ=255)                                                                                                                    cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGCTTGTTTCATTTTTTTAATTTGTTCATAATCAGTTGTAGCAtcc                         >  2:681517/1‑139 (MQ=255)                                                                                                                            tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGtttt                 <  1:41449/141‑1 (MQ=255)                                                                                                                            tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGtttt                 <  1:41438/141‑1 (MQ=255)                                                                                                                             gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGttttt                >  2:491946/1‑141 (MQ=255)                                                                                                                             gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGttttt                >  2:10215/1‑141 (MQ=255)                                                                                                                             gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTAATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGttttt                <  2:269785/141‑1 (MQ=255)                                                                                                                                cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGa             >  2:14692/1‑141 (MQ=255)                                                                                                                                   aTTAAATNATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTg          <  2:588991/141‑1 (MQ=255)                                                                                                                                    ttAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGt         <  2:695123/141‑1 (MQ=255)                                                                                                                                     taaataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTc        <  2:274228/141‑1 (MQ=255)                                                                                                                                       aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCat      >  2:733336/1‑141 (MQ=255)                                                                                                                                       aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCat      >  1:192992/1‑141 (MQ=255)                                                                                                                                       aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCat      >  1:79254/1‑141 (MQ=255)                                                                                                                                         taataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCatat    >  2:257976/1‑141 (MQ=255)                                                                                                                                           ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGt  <  2:381784/141‑1 (MQ=255)                                                                                                                                            taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGt  <  2:433653/140‑1 (MQ=255)                                                                                                                                            taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGt  >  1:433653/1‑140 (MQ=255)                                                                                                                                             |                                                                                                                                            TACCTATGTATTTCTATTTTAAGTACACATTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGT  >  CP000730/1218565‑1218843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.