| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1332949 | 42 (0.640) | 3 (0.050) | 3/222 | NT | 6.9% | intergenic (+159/+63) | hfq/bsaA | host factor‑I protein Hfq/glutathione peroxidase |
| ? | CP000730 | = 1332971 | 45 (0.800) | intergenic (+181/+41) | hfq/bsaA | host factor‑I protein Hfq/glutathione peroxidase | |||||
AATCATATGGGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1332796‑1332949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcttcatataaagTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCAAACGT < CP000730/1332971‑1332832 AATCATATGGGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAAC < 1:287556/141‑1 ATCATATGGGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACG > 2:447083/1‑141 ATCATATGGGCACGATTTAATGACTCGTGTACANAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATANAAACa > 1:120185/1‑140 CATATGGGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCT < 2:758496/141‑1 ATGGGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA < 1:94084/141‑1 GGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT < 2:384482/141‑1 CGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT < 2:344035/141‑1 ACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTC < 2:101508/67‑1 ACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTC > 1:101508/1‑67 AAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTT < 2:639715/141‑1 GCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCA > 2:497199/1‑141 TTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATA > 1:648043/1‑141 aATATAATGGCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATACCTCTCTTGTATCTTGTCATTTGAACATCATTTAATTGATATCACATATGTCTTTGTTTCTATATCTATTTATCATACT < 1:157057/140‑1 CATATAAATTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATCTCTATTTCTCCTACT < 2:740793/141‑1 CATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACT < 2:740620/141‑1 ATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCGTACTT < 1:121799/141‑1 ATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTT < 1:748990/141‑1 ATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCA < 1:486330/141‑1 AAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCAA > 2:189892/1‑139 AAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCAA < 1:189892/139‑1 AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCAAACG > 2:84926/1‑141 GTCGTATCATATATTGACTCGACTTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCAAACGT < 2:12015/141‑1 AATCATATGGGCACGATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1332796‑1332949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcttcatataaagTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATTGATGTCACATATGACTTTATTTCTATATCTATTTATCATACTTCAAACGT < CP000730/1332971‑1332832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |